Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2852 ATGGACCTTGAGGCAAGAAGTCTGCAGCCAAGTGTAAAAGCAATGCTTCTTGCAAAGTTGAGGGAATATAAATCTGATCTAAATAACTTGAAAAAAGAATTTAAAAGATTAACATCTCCCACAGCTGATCAGGCTGCTCGGGACGATTTGTTGGAGACCGGAAGGGCAGATGCATATTTGGCATCTTCTGATCAGAGAGAAAGACTAACTATGTCTGTGGAGAGATTAAATGAATCGAGTGATAGAATCAGGGAGAGCCACAGAGCAGTGTTGGAGACCGAAGAACTTGGCGTCTCAATCCTCCAAGATTTACACCAGCAGCGCGAGACTCTCCTGAGCTCCCATAAAAGGCTTCATGGAGTGGATAATGCTATTGACAAGAGTAAGAAAGTTTTAACCACCATGTCACGGAGAATAACAAGAAACAAATGGATCGTTGGATCTTTGATTGGAGCTCTTGTTTTTGCAGTAGTTGTTATTCTGTTTTACAAGCTATCTCGTTAG 504 0.4187 MDLEARSLQPSVKAMLLAKLREYKSDLNNLKKEFKRLTSPTADQAARDDLLETGRADAYLASSDQRERLTMSVERLNESSDRIRESHRAVLETEELGVSILQDLHQQRETLLSSHKRLHGVDNAIDKSKKVLTTMSRRITRNKWIVGSLIGALVFAVVVILFYKLSR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2852 167 Pfam Vesicle transport v-SNARE protein N-terminus 1 36 IPR007705 GO:0006886|GO:0016020
Psa2g2852 167 Gene3D - 1 45 IPR038407 -
Psa2g2852 167 Coils Coil 13 33 - -
Psa2g2852 167 CDD SNARE_Vti1 73 134 - -
Psa2g2852 167 SUPERFAMILY SNARE fusion complex 76 135 - -
Psa2g2852 167 SMART tSNARE_6 68 135 IPR000727 -
Psa2g2852 167 PANTHER VESICLE TRANSPORT V-SNARE 12 1 166 - -
Psa2g2852 167 SUPERFAMILY t-snare proteins 1 39 IPR010989 GO:0016020|GO:0016192
Psa2g2852 167 Gene3D - 63 143 - -
Psa2g2852 167 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 166 - -
Psa2g2852 167 PIRSF Membrin-2 4 167 IPR027027 GO:0005484|GO:0005794|GO:0016192
Psa2g2852 167 Pfam Snare region anchored in the vesicle membrane C-terminus 74 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2852 Psa-Chr2 330368480 330373231 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2852 K08493 - gmx:100527319 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2852 2 330368480 330373231 Psa2g2852 2 330368480 330373231 ECH