Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2575 ATGCTTCATCCGACTGACATCCATCTATATATATATTCATTTCATCTACGTGAACACTCACAGTTTTCTCATAGCATTACTAACACGATGAAGTCATATTTATTTAAATTTCTCTTATTCCTTCTCCTTTTCATTCTCAACCCATCAACCCTTTCAGCTGGATTCCTTTCTTCTCTAGAAAAACAAATAATAAACAAGATCAAGGGCGAAGCTAGTCACTATGCATGGAAGAAGACGTTAGACAAGATCAAACAGTTACCTCCACCAGATGCACAGCCAGCCAAAGAGATCAAGGGCCTATCTGAAATCAAACAGTATTTCTACTATTTCGGTTACCTCCCGCAATCCGCTCCATTCAATGACATTCTAGACGAGGTTACAATTTCAGCTCTTAAGACCTACCAGAAATATTTCAATCTCCAAGTTACCGGTGATTTAAACATCCAGACTTTACAACAAATCTCTTTACCAAGATGCGGTGTCCCTGACATGAATTTCGAGTATAGTTTCACTGATACACTTAATGTGTCGTGGCCGAAAGGAAACAACAGGTTTCCTTCCGGCACTAGAAACCTTACCTATGGATTTGCTCCAGAGAGTAAAATCTCATTCAACTCTACTCAAGTGTTGAGAAATGCATTAACCCGATGGTCACAGACTACAAACGTCCTGAGTTTCAATGAGACAGCTTACGATGTTGCCGACATTAAGATTGGATTCTACATTTACGATGATGAGATTGAGGATGTTGTGATAGGGGGCTCTTTTATAAACAAGCAACTCAATTCTAATGTAATGTCAGGTGTGATATCGCTTGACGCTTCGGAGCACTGGGTGTTGCCGGATGAGAACTATACTTGGTCTTGGCAGGATGTAGAAATTGATTTGGAGACTGCGGTGATGCATCAGATAGGTCATCTGCTTGGACTTGATCATTCTTCTGATGAGGAGTCAATTATGTATCCAACAATATTGCCATCAAAACAAAGGAAGGTGGAGATTACAGATTCTGATAACAAAGCCATCCAACAACTCTATTCTATTAAAGACAACAACAGAAGTTCTGGTAACGTTGGACTTGGACGCTTTACAATATTTAGGTCTAGTTACAGTTTCGTAATATCTTTGTCCCTTGGATTTGCTTTCATGGCTATTCTGAACTAG 1164 0.3952 MLHPTDIHLYIYSFHLREHSQFSHSITNTMKSYLFKFLLFLLLFILNPSTLSAGFLSSLEKQIINKIKGEASHYAWKKTLDKIKQLPPPDAQPAKEIKGLSEIKQYFYYFGYLPQSAPFNDILDEVTISALKTYQKYFNLQVTGDLNIQTLQQISLPRCGVPDMNFEYSFTDTLNVSWPKGNNRFPSGTRNLTYGFAPESKISFNSTQVLRNALTRWSQTTNVLSFNETAYDVADIKIGFYIYDDEIEDVVIGGSFINKQLNSNVMSGVISLDASEHWVLPDENYTWSWQDVEIDLETAVMHQIGHLLGLDHSSDEESIMYPTILPSKQRKVEITDSDNKAIQQLYSIKDNNRSSGNVGLGRFTIFRSSYSFVISLSLGFAFMAILN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2575 387 Gene3D Collagenase (Catalytic Domain) 90 353 IPR024079 GO:0008237
Psa2g2575 387 Pfam Putative peptidoglycan binding domain 100 153 IPR002477 -
Psa2g2575 387 SUPERFAMILY PGBD-like 100 154 IPR036365 -
Psa2g2575 387 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 126 346 - -
Psa2g2575 387 SMART col_5 181 348 IPR006026 GO:0006508|GO:0008237|GO:0008270
Psa2g2575 387 PRINTS Matrixin signature 154 167 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa2g2575 387 PRINTS Matrixin signature 210 225 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa2g2575 387 PRINTS Matrixin signature 299 324 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa2g2575 387 PRINTS Matrixin signature 334 347 IPR021190 GO:0004222|GO:0006508|GO:0008270
Psa2g2575 387 PANTHER MATRIXIN PROTEIN 95 348 - -
Psa2g2575 387 Pfam Matrixin 190 346 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Psa2g2575 387 PANTHER MATRIX METALLOPROTEINASE 95 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2575 Psa-Chr2 296402829 296404361 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2575 - - mtr:MTR_5g036290 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2575 2 296402829 296404361 Psa2g2575 2 296402829 296404361 ECH