Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2409 ATGAGTGCTTTAACCTTAAAAGCCTTCACATACATGTTTCTCATCACATTTCTCATCTGGTCTTCAAATTTTGAGTGTTGCATTGCAAGAAGAGGTAAACATTGGAGACAAACCAGAACCTTCTCATCTTCTTTGTTCAAGAAAAAAGGAAAGAGTTACAATGGAAATACTCATAACAAAAATCACCACAATGGAGGATCAAATTCAAAACCAAAGTCTCCTCCACCATTATCGCCGAAATCTCCTCCCTCGCATAAAAATGTTCCATCATCTCCACCAATTTCTAAGCCAAAATATTCCCCTTCAACTCCGCCACCAAGAGGTTACAATGGCATGCAACATTCAACTTTCTTCAATGTGCTAGATTACGGAGCTAAAGGAGATGGTAACACCGACGACACAAAGGCATTTGAAGCAACATGGGCAGCTACATGTAAAGTAGAGGCATCAACCATGATAGTTCCAGCAAACTACACATTTTTCGTGGGCCCGATTTCGTTCTCGGGCCCATATTGTAAGCCCAACATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAACCCAAGTGCATGGAGTGGAGTAACACTACAATGGCTTGAATTCACAAAACTAGAAGGAATTGTTATTCAAGGAAATGGTGTTATTGATGGAAGAGGTTCTGTTTGGTGGCAAGATTTTCCATATGATAATCCAATAGATGATGAAGAAAAGCTTATAATTCCTTTAAATCATACTCAAAATCCTCCGATGCCGGTGCAAAATGAGATGGGAAGAACAATGCCGAGTAACAAACCAACGGCACTAAGGTTTTATGGGAGCTATGGTCCAACTGTCACGGGTATAACAATTCAAAATAGTCCTCAGTGTCATCTAAAGTTTGACAGTTGCAATAGGGTTCTTGTTCATGATGTGAGCATTTCATCTCCCGGCGATAGTCCTAACACCGACGGAATTCATCTTCAGAATTCCAAAGATGTCTTGATTTACAGCAGCAAATTAGCATGCGGAGATGATTGTATATCTATACAAACTGGATGCTCAAATGTATATGTACACAATGTCGACTGCGGGCCGGGACATGGAATAAGCATTGGAAGTTTAGGAAAAGATAACACTAGAGCTTGTGTCTCAAACATTACTGTGAGAGATGTAAACATTCACAACTCAATGAATGGTGTTAGAATCAAAACATGGCAGGGTGGATCTGGTTCAGTGCAGGGAGTGTTATTCTCTAACATACAAGTTACAGAAGTTCAACTTCCAATAGTGATAGACCAATTCTATTGCGACAAAAGAACATGCACAAATCACACATCAGCAGTGTCACTGGAAGGAATCAACTACGAAAGAATAAAGGGAACATACACAGTTAAACCAGTACACTTTGCCTGCAGTGATAGCTTTCCTTGTGTAGATGTTTCTTTAGCCACTGTTGAGTTGAAACCAATTCAAGAACAGTATCACTTATATGATCCATTTTGCTGGCAGACTTTTGGTGAATTGAAAACTCCAACTGTTCCGCCGATTGGTTGTTTGCAGATTGGGAAGCCGACGAATAATCGAATTCAGACTGATCATGATATATGTTGA 1596 0.3979 MSALTLKAFTYMFLITFLIWSSNFECCIARRGKHWRQTRTFSSSLFKKKGKSYNGNTHNKNHHNGGSNSKPKSPPPLSPKSPPSHKNVPSSPPISKPKYSPSTPPPRGYNGMQHSTFFNVLDYGAKGDGNTDDTKAFEATWAATCKVEASTMIVPANYTFFVGPISFSGPYCKPNIVFQLDGTIIAPTNPSAWSGVTLQWLEFTKLEGIVIQGNGVIDGRGSVWWQDFPYDNPIDDEEKLIIPLNHTQNPPMPVQNEMGRTMPSNKPTALRFYGSYGPTVTGITIQNSPQCHLKFDSCNRVLVHDVSISSPGDSPNTDGIHLQNSKDVLIYSSKLACGDDCISIQTGCSNVYVHNVDCGPGHGISIGSLGKDNTRACVSNITVRDVNIHNSMNGVRIKTWQGGSGSVQGVLFSNIQVTEVQLPIVIDQFYCDKRTCTNHTSAVSLEGINYERIKGTYTVKPVHFACSDSFPCVDVSLATVELKPIQEQYHLYDPFCWQTFGELKTPTVPPIGCLQIGKPTNNRIQTDHDIC* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2409 531 MobiDBLite consensus disorder prediction 72 104 - -
Psa2g2409 531 Pfam Glycosyl hydrolases family 28 148 227 IPR000743 GO:0004650|GO:0005975
Psa2g2409 531 Pfam Glycosyl hydrolases family 28 264 483 IPR000743 GO:0004650|GO:0005975
Psa2g2409 531 Gene3D - 108 520 IPR012334 -
Psa2g2409 531 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 521 - -
Psa2g2409 531 MobiDBLite consensus disorder prediction 46 104 - -
Psa2g2409 531 SMART pbh1 325 346 IPR006626 -
Psa2g2409 531 SMART pbh1 206 227 IPR006626 -
Psa2g2409 531 SMART pbh1 298 324 IPR006626 -
Psa2g2409 531 SMART pbh1 407 428 IPR006626 -
Psa2g2409 531 SMART pbh1 378 399 IPR006626 -
Psa2g2409 531 SMART pbh1 348 368 IPR006626 -
Psa2g2409 531 PANTHER - 6 521 - -
Psa2g2409 531 MobiDBLite consensus disorder prediction 46 71 - -
Psa2g2409 531 ProSitePatterns Polygalacturonase active site. 355 368 IPR000743 GO:0004650|GO:0005975
Psa2g2409 531 SUPERFAMILY Pectin lyase-like 114 529 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2409 Psa-Chr2 276013697 276016567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2409 2 531 Glycoside Hydrolase AT1G60590 65.498 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2409 - - gmx:732602 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2409 2 276013697 276016567 Psa2g2409 2 276013697 276016567 ECH