Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2345 ATGGCGGCACCAGAAAACACACTTCATTCCACAGATTCTCCCTTAAAGAGGCAAAGAGAAGATGAAGTGAACGGTGTCTCCGATACTCTCTCCAAAGAACCCCAGCCTAATGGTTTATCATCTGTTATTCCTGGATGGTTCTCTGAAATTAGCCCAATGTGGCCAGGGGAAGCACACTCCTTGAAAGTGGAAAAAATTTTGTTTCAAGGAAAGTCTGATTATCAGGATGTTATGGTCTTCCAGTCAGCGACATATGGCAAGGTTCTTATTTTGGATGGAGTCATTCAGCTCACAGAAAGAGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGACGGGGGAGTCCTGCGGGAAGTTGCACGCCACTCTTCAGTCGAAAAGATAGACATTTGCGAAATAGACAAGATGGTTGTCGATGTCTCCAAACAATATTTCCCTGATATAGCAGTAGGTTTTGCGGATCCACGTGTGACACTTAATATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGATCCTATTGGCCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCGGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCGGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGTGAACTGCCGCCAGGTATTCAAAGGGTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGACCTTCCGTTGATTTCAAGCATCCGGTGAATCCTATTGATGAGAATGATAGCCAGCAGGCGGCACGACCATTGAAATTTTACAACCGTGAGATTCATTCAGCAGCCTTCTGTTTGCCATCTTTTGCCAAGAGGGCAATTGCTTCTAAAGAAAATTAA 1005 0.4458 MAAPENTLHSTDSPLKRQREDEVNGVSDTLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQYFPDIAVGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQAARPLKFYNREIHSAAFCLPSFAKRAIASKEN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2345 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Psa2g2345 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 329 IPR029063 -
Psa2g2345 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Psa2g2345 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 13 334 IPR001045 GO:0003824
Psa2g2345 334 MobiDBLite consensus disorder prediction 1 37 - -
Psa2g2345 334 CDD AdoMet_MTases 122 233 - -
Psa2g2345 334 MobiDBLite consensus disorder prediction 12 27 - -
Psa2g2345 334 TIGRFAM speE: spermidine synthase 46 324 IPR001045 GO:0003824
Psa2g2345 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Psa2g2345 334 PANTHER SPERMIDINE SYNTHASE-RELATED 13 334 - -
Psa2g2345 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Psa2g2345 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Psa2g2345 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Psa2g2345 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Psa2g2345 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2345 Psa-Chr2 268300675 268304833 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2345 K00797 - gmx:100792107 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2345 2 268300675 268304833 Psa2g2345 2 268300675 268304833 ECH