Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2215 ATGAGTGATATTTTGGGTCCTGATTTGATCACTGACCTTCCTCAAAGCATTATAGAAACCATTCTCATACAACTTCCTATAAGAGATGCTACGCGAACAAGCATTTTGTCAAGCAGATGGAGGAACACATGGCGTTCCATCACCCACCTTGTTTTCGATGAAAAATCTTTCCCGATCCTTTGCGATTACAATGATCAACAACTTCTTCAAGAAAGAGTTGTCAAGTTTATCTCCATGGTGTTATCTCTTCACCAAGGACCTATTCATAGGTTACAAATTACACATAGAAGCTTGCTGAGCTTCCCTGATATCGATCGGTGGATTCTTTTTGTATCTAAGAATGATGTTGAAGATTTGACTCTTGAGTTGGGAGGAGAATTCTTTAGAATGCCTTCCTGTTTTTTCGATTGTGAGAAATTGTTTCGATTGGAGCTCTCGCGCTGCGAGTTGTATCCACCCGTTAGTTTTAAGGGGTTTTCGTGTTTGAAGAGGCTCAATCTTCATCAGGTTGTGATATCCTCTGAAGCAATTGAGAGACTCATTTCGACTTGCCCTCTCTTGGAGAGTTTGTCACTTATAGGCTGTGATTGTTTAGCTCTTACTATTTCTGCTTCGAACCTCAAGTACTTGTATCTCTATGGTGAATTCAACGACCTTTATTTAGTAGATATGCCGCTTTTGGTTGAACTATTTGTTTCTATGTATATGCCTGACGATGATCTTTCCGAGCATATTGAACAAAGTTCAAATTGCAATTTTGTTAACTTTCTTAGTGGTGTGCCAAATCTTAAGAGACTTGATGGAGCTGTGCACTTCACAAAGTATTTGAGCATAGGTAATGACCTAAGGCATCTTGCACTAATGTTCAACAATTTGGAGTGTATTCAAATGCGTCCGGTAAGTTTTATGGACATGAAAGAGATACTTGTAGTTCTTCGCTTGATTAAATGCTCTCCCAATCTAAAGGAACTTCACATTTCAGGTATATCCGACATACAAGCTTCTGCATATACAGAAGATTTGGATTTTTGGGAAAAAGAATACCACTCAGATTCTATACTTCGCAAGCTTAAAGTTGTGGATTTGGCAGAAATGAGTGGTGTTCCACATGAGATTGAATTTATCAAATTTTTGCTTGGTTCTTCACCTGTCCTTGAGAAAATGTTTATCATTCCTTATATAAGTAATAAAGAATATCGGTTGAAAATGTTGGTCGAATTGATGAAATTTCGAAGAGCTTCTTCTAAAGCAGAAATTTATTTCACCTGCCTTGAGTATCCAATCTGTGTTTCTCCAGGTTTTCGAGACTAG 1311 0.3799 MSDILGPDLITDLPQSIIETILIQLPIRDATRTSILSSRWRNTWRSITHLVFDEKSFPILCDYNDQQLLQERVVKFISMVLSLHQGPIHRLQITHRSLLSFPDIDRWILFVSKNDVEDLTLELGGEFFRMPSCFFDCEKLFRLELSRCELYPPVSFKGFSCLKRLNLHQVVISSEAIERLISTCPLLESLSLIGCDCLALTISASNLKYLYLYGEFNDLYLVDMPLLVELFVSMYMPDDDLSEHIEQSSNCNFVNFLSGVPNLKRLDGAVHFTKYLSIGNDLRHLALMFNNLECIQMRPVSFMDMKEILVVLRLIKCSPNLKELHISGISDIQASAYTEDLDFWEKEYHSDSILRKLKVVDLAEMSGVPHEIEFIKFLLGSSPVLEKMFIIPYISNKEYRLKMLVELMKFRRASSKAEIYFTCLEYPICVSPGFRD* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2215 436 Pfam Leucine Rich Repeat 161 185 IPR013101 -
Psa2g2215 436 SUPERFAMILY F-box domain 6 63 IPR036047 GO:0005515
Psa2g2215 436 PANTHER F-BOX PROTEIN-LIKE 8 398 - -
Psa2g2215 436 SMART 9598neu4hmm 351 422 IPR006566 -
Psa2g2215 436 Pfam FBD 354 389 IPR006566 -
Psa2g2215 436 Pfam F-box domain 11 47 IPR001810 GO:0005515
Psa2g2215 436 PANTHER - 8 398 - -
Psa2g2215 436 Gene3D Ribonuclease Inhibitor 109 387 IPR032675 -
Psa2g2215 436 ProSiteProfiles F-box domain profile. 7 55 IPR001810 GO:0005515
Psa2g2215 436 SUPERFAMILY RNI-like 112 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2215 Psa-Chr2 242826689 242828784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2215 8 192 EF-hand Containing Proteins AT5G41840 27.136 8.26e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2215 - - gmx:100781833 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2215 2 242826689 242828784 Psa2g2215 2 242826689 242828784 ECH