Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2214 ATGGATGATGTTTTGGATCCTGATTTGATCAGTGACCTTCCTCAAAGCATTATAGAGACAATTCTCATACAACTTCCGATAAGAGATGCTGTCAGAACTAGCATTTTGTCAAGAAAATGGAGGTACAAATGGTCTACCATTACTCAGCTCGTGTTTGATGAAAAATGTTACCCTACTTGTCACGATCGGGAGCTTGTTCAGAAAAGTGTTGTTGAGTTTATCACCAGATTGTTGTTTCTTCATCAAGGGCCTATTCATAAGTTTCAAATTGTCAATACAAGCTTGCAGAGCTGCCCTGCGATAAATCAGTGGATTCTTTTTCTTTCCAGAAATGATATTAAGGATTTGAATCTTGAGTTAGGAGAAGGAGAATTCTTTAGGATGCCTTCCTGTTTTTTCGGTTGTGAGAAATTGACTCGATTGGAGCTCTCGCGCTGTGAGTTGTATCCGCCTGCTAGTTTTAAGGGTTTTTTGTGTTTGAAGAGCCTCAATCTTCATCAGGTTTTGATATCCCCTGAAGCAATTGAGAGCCTTATTTCAAGTTGCCCTCTCTTGGAGAGTTTATCACTCTCGTACTTTGATTGCTTAGCTCTAACTGTCTGCGCTCCTAACCTCAAGTACTTGTGTCTTGAAGGTGAATTCACCGAAATTTGTCTTGTAGATACTCCTCTCTTGGTTGAATTATCCGTTGCTATGTATATGACTGACGATGTTGCCGAGCACATGGAGCAAAGCTCAACTTGCAATTTTGTCAAGTTTCTTGGAGGAAACGAGCATCCTGCTATAATGTACAACAATTTGGAAACTATTGAAATGTACCAAGTAAGTTTTGAGGATATGAAAGAGATACTTGTCGTCCTTCGCTTGATTACAAGCTCTCCTAATCTAAAGGAACTTCACATTTCGGGTTCATCAAACATATCAGCTGGCACATATGCTGCTGGTATGGAATTTTGGGAAAAAGAATGTCCTTCAGATTCTATACTTAGTCAGCTTAAACTTGTGAAGTTGACAGAAATGAGTGGTGTGCCACATGAGGTCGAATTTATCAAATTTTTGCTTGGCTGTTCACCTGTGTTGGAGACAATGAGTATCATTCCTTCTATGTATGATTTGGAATGTCAATTGAAAATGTTGGTTGAATTGATGAAGTTTCGAAGAGCTTCTACTAAAGCAGAAGTTTATTTCATCCGGGGAGATTAA 1203 0.3907 MDDVLDPDLISDLPQSIIETILIQLPIRDAVRTSILSRKWRYKWSTITQLVFDEKCYPTCHDRELVQKSVVEFITRLLFLHQGPIHKFQIVNTSLQSCPAINQWILFLSRNDIKDLNLELGEGEFFRMPSCFFGCEKLTRLELSRCELYPPASFKGFLCLKSLNLHQVLISPEAIESLISSCPLLESLSLSYFDCLALTVCAPNLKYLCLEGEFTEICLVDTPLLVELSVAMYMTDDVAEHMEQSSTCNFVKFLGGNEHPAIMYNNLETIEMYQVSFEDMKEILVVLRLITSSPNLKELHISGSSNISAGTYAAGMEFWEKECPSDSILSQLKLVKLTEMSGVPHEVEFIKFLLGCSPVLETMSIIPSMYDLECQLKMLVELMKFRRASTKAEVYFIRGD* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2214 400 SUPERFAMILY RNI-like 90 365 - -
Psa2g2214 400 Pfam FBD 323 365 IPR006566 -
Psa2g2214 400 Pfam Leucine Rich Repeat 159 183 IPR013101 -
Psa2g2214 400 SUPERFAMILY F-box domain 6 72 IPR036047 GO:0005515
Psa2g2214 400 ProSiteProfiles F-box domain profile. 7 41 IPR001810 GO:0005515
Psa2g2214 400 SMART 9598neu4hmm 326 397 IPR006566 -
Psa2g2214 400 Pfam F-box domain 10 44 IPR001810 GO:0005515
Psa2g2214 400 Gene3D Ribonuclease Inhibitor 85 374 IPR032675 -
Psa2g2214 400 PANTHER - 5 368 - -
Psa2g2214 400 PANTHER F-BOX PROTEIN-LIKE 5 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2214 Psa-Chr2 242314833 242316630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2214 8 214 EF-hand Containing Proteins AT5G41840 25.000 5.88e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2214 - - gmx:100781833 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2214 2 242314833 242316630 Psa2g2214 2 242314833 242316630 ECH