Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0180 ATGGATCTCTCTTCACTACACTCCAATTCTCCAATTCAACCAGAAGAAGACGAGTGGGACACTGATGGATTTGTGATTCCGAGTCTTGGAATTGAAGAGTCAGATCAAACTAAAGAAAATGTTACAAGCATAGAACCATCAAATTCTGCTGCAAAGGTGAAGAAGGAAGAGAACATCTATCTCGGCCCACACGGGGCACCTCCTTCACAATCAAAACAGAAGGAAGAGGTAAATTTATCAAACCGGAAGCAGCGGTTCAAGCAAAAGCTGAAAGAAGCCGATAAGAAAAATAGTGGGACTGGTAGGGAGAATAAGTTGGATAACTTAAGGGAGCTTGTGGGTGTGGGGAAAGCAAGTGCCGGCATGGTGAAGAGATCCTCTCCTAAGGACTGGTTAGATCCACATTGCCATGAAGCTGAGTTTGAGAGGAGAACAAAACTGTCACTACTATTACTTCCCTCTCGCCACATCCATCACCAACACCAACCATGTCTTTCTGCTTTGGATTCTCATTCCTACGCCCACATGCTCCAACAAATTATCCAAAACGGCGCCGACCCAAACGCCGGGAAGCATCTCCACTGTCACATTCTCAAGCGTGGCGCTTCTCTTGACTTGTTCGCTCAAAACATTCTTCTTAACTTTTATGTTCAGTCCAATTCCTTGCATGATGCTTCCAAACTGTTTGATGAAATGCCTCTCACTAACACCATCACTTTTGTCACCCTGGCTCAAGGTTACTCCCGTTCCCATCAATTCAATGAAGCTCTTCATTTCATTCTCAGGTTATTCAGAGAAGGGCATGAGGTGAACCCGTTTGTTTTTACTACTCTTCTCAAGTTGCTGGTGAGCATGGATTTGGCTCACTTGTGTTGGACACTTCATGCTTGTGTTTATAAGCTTGGCCATCATGTTAATGCATTTGTTGGGACTGCTCTTATTGATGCTTATTCTGTTTGTGGAAATGTCGATGTTGCTCGTCATGTTTTCGATGATATTTGTTGTAAGGATATGGTGTCTTGGACTGGGATGGTAGCTTGTTATGCTGAGAATTGTTTCTATGAGGAGTCATTGCAACTTTTCAATAAAATGAGGATTATGGGGTACAGGCCCAACAATTTCACCATTTCCGGTGCACTTAAGTCCTGTCTTGGTCTAGAGGCGTATAATGTTGGGAAAAGTGTTCATGGATGTGCTTTGAAAGGTAGTTATGATCATGATCTTTTTGTTGGCATTGCGTTGCTTGAGTTGTATGCGAAGTCTGGGGAGATTGTGGACGCGCAACGGCTTTTTGAGGAAATGCCGAAAAATGATCTTATTCCTTGGAGTCTGATGATAGCACGGTACGCTCAGAGTGACAGAAGTAAGGAGGCTTTGGATTTGTTTCTTCGAATGAGGCAAACACCTGTCCTCCCTAATAATTTTACATTTGCTAGTGTGCTGCAAGCTTGTGCCTCTTTAGTTTTGCTTAATTTGGGAATGCAAATTCATTCTTGTGTGCTGAAATTTGGTCTGAACTCAAACGTGTTTGTGTCAAATGCCATCATGGATGTTTATGCTAAGTGTGGTGAAATTGAGAACTCCATGAAATTGTTCGAGGAATTGCCAGATCGGAATGATGTGACTTGGAACACTATAATCGTTGGTTATGTTCAGCTTGGGGATGGAGAGAAAGCAATGAATTTATTTTCATATATGCTTGAGTATGACATGCAGCCAACTGAAGTGACATACTCAAGTGTTCTTCGTGCCTGTGCTAGCTTAGCGGCATTAGAGCCAGGACTTCAGGACTACGGCATTGAGCCATGTATAGAACATTATACTTGCATGGTTTGGCTTCTTGGAAGATTGGGCCGATTGGATGAAGCAATGAAACTCATTGGAGAAATTCCATATCAACCTAGTGTAATGGTTTGGCGCGCATTGCTCGGGGCTTGTGTTATCCACAAGAAAGTTGATCTAGGAAGAGTTTGTGCCCAACATGTACTTGAGATGGAGCCGCATGATGATGCGACCCATGTACTTCTGTCAAACATGTATGCCACTGCGGGGCGATGGGACAGTGTAGCTTTAGTTAGGAAAAATATGCAAAAGAAAAGAGTGAAGAAAGAACCTGGCTTAAGCTGGGTTGAGAACCAAGGTGTTGTTCACTATTTCTCTGTGGGCGACACTTCTCATCCTGACATTAAACTAATATGTGCTATGCTTGAATGGTTAAACAAGAAAACCAGGGATGCAGGATATGTTCCTGATTGCAATGCTGTTTTGCTTGATGTAGAGGAGGATGAAAAAGAGCGACACCTGTGGTTACATAGTGAGAGACTGGCCTTGGCTTATGGACTAATTCGGACCCCGCTTGCATGTTCTATTCGCATTATTAAAAATCTTCGAATATGTGTAGATTGTCATGCAGTGATAAAGTTGATATCGAAAGTTGTACAACGGGAAATTGTTATCAGGGATATAAATCGATTTCATCATTTTCGTCATGGGGTTTGCTCATGTGGTGATTACTGGTAA 2520 0.4266 MDLSSLHSNSPIQPEEDEWDTDGFVIPSLGIEESDQTKENVTSIEPSNSAAKVKKEENIYLGPHGAPPSQSKQKEEVNLSNRKQRFKQKLKEADKKNSGTGRENKLDNLRELVGVGKASAGMVKRSSPKDWLDPHCHEAEFERRTKLSLLLLPSRHIHHQHQPCLSALDSHSYAHMLQQIIQNGADPNAGKHLHCHILKRGASLDLFAQNILLNFYVQSNSLHDASKLFDEMPLTNTITFVTLAQGYSRSHQFNEALHFILRLFREGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHVNAFVGTALIDAYSVCGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNKMRIMGYRPNNFTISGALKSCLGLEAYNVGKSVHGCALKGSYDHDLFVGIALLELYAKSGEIVDAQRLFEEMPKNDLIPWSLMIARYAQSDRSKEALDLFLRMRQTPVLPNNFTFASVLQACASLVLLNLGMQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGEKAMNLFSYMLEYDMQPTEVTYSSVLRACASLAALEPGLQDYGIEPCIEHYTCMVWLLGRLGRLDEAMKLIGEIPYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDSVALVRKNMQKKRVKKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVEEDEKERHLWLHSERLALAYGLIRTPLACSIRIIKNLRICVDCHAVIKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0180 839 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Psa2g0180 839 TIGRFAM PPR: pentatricopeptide repeat domain 339 372 IPR002885 -
Psa2g0180 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Psa2g0180 839 PANTHER OS01G0913400 PROTEIN-RELATED 596 782 - -
Psa2g0180 839 PANTHER OS01G0913400 PROTEIN-RELATED 171 260 - -
Psa2g0180 839 PANTHER OS01G0913400 PROTEIN-RELATED 269 596 - -
Psa2g0180 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 442 466 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 606 630 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 413 438 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 339 368 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 311 334 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 210 232 IPR002885 -
Psa2g0180 839 Pfam PPR repeat 513 538 IPR002885 -
Psa2g0180 839 MobiDBLite consensus disorder prediction 1 106 - -
Psa2g0180 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 538 IPR002885 -
Psa2g0180 839 Coils Coil 76 96 - -
Psa2g0180 839 Pfam DYW family of nucleic acid deaminases 747 839 IPR032867 GO:0008270
Psa2g0180 839 PANTHER - 269 596 - -
Psa2g0180 839 PANTHER - 171 260 - -
Psa2g0180 839 PANTHER - 596 782 - -
Psa2g0180 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Psa2g0180 839 Pfam PPR repeat family 539 586 IPR002885 -
Psa2g0180 839 Gene3D Tetratricopeptide repeat domain 389 489 IPR011990 GO:0005515
Psa2g0180 839 Gene3D Tetratricopeptide repeat domain 290 388 IPR011990 GO:0005515
Psa2g0180 839 Gene3D Tetratricopeptide repeat domain 490 593 IPR011990 GO:0005515
Psa2g0180 839 MobiDBLite consensus disorder prediction 33 49 - -
Psa2g0180 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Psa2g0180 839 Gene3D Tetratricopeptide repeat domain 157 289 IPR011990 GO:0005515
Psa2g0180 839 Gene3D Tetratricopeptide repeat domain 594 733 IPR011990 GO:0005515
Psa2g0180 839 MobiDBLite consensus disorder prediction 76 106 - -
Psa2g0180 839 Pfam E motif 649 711 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0180 Psa-Chr2 6803764 6809904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0180 212 839 Glycoside Hydrolase AT3G49170 35.969 3.45e-137 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0180 - - gmx:100798564 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0180 2 6803764 6809904 Psa2g0180 2 6803764 6809904 ECH