Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0166 ATGGCGAAAGTGGTATACATGGCTTTACCTTTCCTCACACAACCCCACAAAACCACCACAGCTTCTTCTTCATCATCATCATCATCTTCAAAACCATCGAAGCTTCCACATAGAACACGCAGCACCAACATATCCATTCCATCATCTACCAACGTTGCTGCTAACCGTTCTCCTAAACCCAAGAAGCTTAATTCAGATGTTTCTCCTCACAGGGCTGTGTCTGCGGTGAGATTGATGAGAATTGAACTTGGTGGTGCTTTTGCCGACCTTCTTAATGAGAAAGGGAAAGGTTCTGGTGAAAATGAAATGGGTTATGTTGAAAGAACGCTTGGCTTTCGCACTCGAGAATTGAATAATCAAGACCTTAGATTGGTTACAGAAGTTGTGGGGGGTACGATTCGTTGGAGAAGATACCTTGATCATTTAATCAGTTCATTGTGTCATAATAAAGATATATCTAGTATGGAACCTCTTCTCTTACAGATTCTACGAATCGGCTTCTATGAGATTCTCAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAATGTGCAGCTTGCCAAAGCTGCTCTCAGGCCGGGTGCAGGCAACTTGGTCAACGGAATCCTCCGAAAGCTAGTTGTGCTCAAGGAAAATGAAACTCTTCCTTTGCCCGAAGTAGTGGGTGATGATCGTTCTCAAGCACGTGCTCTGGCAACTCTCTACTCGCATCCAGTTTGGATCGTAAGGAGATGGACAAGGTATCTTGGTCAGGAAGAAACCATTAAATTGATGATATGGAACAACAGTGAACCGAGTTATAGCTTAAGAGCAAATCGGGCAATAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGCGTTGAAGGTCCCACACAAGCTTTCATTGCATTTGGATGACTTTGTTCGCATTAAAACTGGGTTGCAGACCATCATTCATGCTGGCCTTCTCAAAAAGGGTTTATGTTCAGTTCAGGACGAGAGTGCAGGTCTGATAGTTTCTATTGTGGATCCTCAACCCGGTGAAACCATCGTTGATTGTTGTGCTGCTCCTGGTGGAAAAACCCTCTACATGGCCTCTCATTTAAGTGGACAAGGTATGGTATACGCAATTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCATCAAGTAGATGGTGTCGTTACCACTGTCCATGCCGATCTCCGTACATTAACTGATGGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGACGCACCGTGCTCAGGGCTTGGCGTTCTTTCAAAGAGAGCAGACTTACGTTGGAACAGAAATCTGGAAGATATGGAAGAATTGAAGCAATTACAGGATGAACTCCTCGATGCAGCATCCACATTGGTAAAACCCGGAGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCTGCATTTCTATCAAGACATCATGATTTTCACATTGATCCTGTAGACCGATATGTTCCACCTGATTTTGTGACGCCAAATGGTTTCTATTTCTCCAACCCAGTAAAAAATTCACTCGATGGCTCTTTTGCTGCTCGTTTGGTACGCTCTTTGCAAAATGAACTTCAGGGAACTCCTTCATCACTCTATCTCGAACTGGACGACACTCAATGA 1665 0.4318 MAKVVYMALPFLTQPHKTTTASSSSSSSSSKPSKLPHRTRSTNISIPSSTNVAANRSPKPKKLNSDVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVERTLGFRTRELNNQDLRLVTEVVGGTIRWRRYLDHLISSLCHNKDISSMEPLLLQILRIGFYEILKLDMPPYAVVDENVQLAKAALRPGAGNLVNGILRKLVVLKENETLPLPEVVGDDRSQARALATLYSHPVWIVRRWTRYLGQEETIKLMIWNNSEPSYSLRANRAIGFSRDDLVTQLNALKVPHKLSLHLDDFVRIKTGLQTIIHAGLLKKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMVYAIDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRNLEDMEELKQLQDELLDAASTLVKPGGVLVYSTCSIDPEENDERVAAFLSRHHDFHIDPVDRYVPPDFVTPNGFYFSNPVKNSLDGSFAARLVRSLQNELQGTPSSLYLELDDTQ* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0166 554 SUPERFAMILY NusB-like 106 242 IPR035926 -
Psa2g0166 554 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 113 532 IPR004573 GO:0006364|GO:0008649
Psa2g0166 554 PRINTS RNA (C5-cytosine) methyltransferase signature 318 332 IPR023267 GO:0001510
Psa2g0166 554 PRINTS RNA (C5-cytosine) methyltransferase signature 347 357 IPR023267 GO:0001510
Psa2g0166 554 PRINTS RNA (C5-cytosine) methyltransferase signature 415 427 IPR023267 GO:0001510
Psa2g0166 554 PRINTS RNA (C5-cytosine) methyltransferase signature 465 481 IPR023267 GO:0001510
Psa2g0166 554 PRINTS RNA (C5-cytosine) methyltransferase signature 516 533 IPR023267 GO:0001510
Psa2g0166 554 PRINTS Viridiplantae FMU-related RCMT signature 76 99 IPR023268 -
Psa2g0166 554 PRINTS Viridiplantae FMU-related RCMT signature 100 116 IPR023268 -
Psa2g0166 554 PRINTS Viridiplantae FMU-related RCMT signature 215 228 IPR023268 -
Psa2g0166 554 PRINTS Viridiplantae FMU-related RCMT signature 492 504 IPR023268 -
Psa2g0166 554 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 28 534 IPR023267 GO:0001510
Psa2g0166 554 Pfam NusB family 105 208 IPR006027 GO:0003723|GO:0006355
Psa2g0166 554 Gene3D Vaccinia Virus protein VP39 333 546 IPR029063 -
Psa2g0166 554 CDD AdoMet_MTases 345 471 - -
Psa2g0166 554 Gene3D Sun protein; domain 3 225 331 - -
Psa2g0166 554 MobiDBLite consensus disorder prediction 15 62 - -
Psa2g0166 554 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 229 533 IPR029063 -
Psa2g0166 554 Pfam 16S rRNA methyltransferase RsmB/F 337 531 IPR001678 GO:0008168
Psa2g0166 554 Gene3D - 89 217 IPR035926 -
Psa2g0166 554 MobiDBLite consensus disorder prediction 15 69 - -
Psa2g0166 554 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 258 534 IPR001678 GO:0008168
Psa2g0166 554 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 28 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0166 Psa-Chr2 6558807 6563078 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0166 K03500 - gmx:100779327 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0166 2 6558807 6563078 Psa2g0166 2 6558807 6563078 ECH