Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4994 ATGTCGGTTGGTTGTTCATCTTTTTATTCATGCAACAAGATGAGTTTACTAGGTGAAACCATGAAGCCACATGCTCTTCTTATTCCATTTCCAATACAAGGTCACATAAATCCATTTCTCAAACTAGCAAAGATCCTTCACAGCAAAGGCTTCTACATAACATTCCTCAACACTGAATTCAACCACAAACGTTTGCTCAAATCAAAAGCCTCTGATGATCTTCTCAATGGTTTGTCAGATTTCAAATTTGAGACCATACCAGATGGTCTCCCTCCCACAAACAACATGGATTCAACTCAAAGCATTCCGGATCTTTGTGAGTCTACAAGTAAACACTGTTTGGTAGCATTGTGTGAACTTATATCAAAACTCAATGATCCTCCAGTTACTTGCTTAATCTCTGATGGTATCATGTCTTTTAGTATTCAAGCTTCTCAACAATTTGGGTTGCCTAATGTTCTCTTTTGGGCTCATAGTGCTTGTGGTTTCATGGGATTCAAAGAATGCAGGAATCTCATGGAAAAAGGCATAACACCACTTCAAGATGCAAGTTATCTGACAAATGGGCATTTAGACACCATCATAGACTGGATCCCTGGCATGAAGAATATTACATTAAGAGACCTTCCTGGTATATATCGTACAACACAACCAAATGATTCACTTTTGAACTTTGTGGCTGAACAAATTGAAACAGCTTCAAAAGCTTCTGCTATTATTCTACCAACTTTTGATGCATTAGAATCTAATGTTCTGAATGAACTCTCTACAATGTTTCCTAAACTCTACACAATAGGCCCTCTTGAGTTATTCCTTGATAAAATTTCAGAGAACAATGAGTTTGAATCTATTAAATGTAATTTGTGGAAAGAAGAAAGTGAGTGTCTCAAATGGCTTGACGCGCAAGAACCAAATTCCGTTATGTATGTGAATTTTGGTAGTGTTATAGTTATGAAGTATAATCAACTTGTTGAATTGGCTTGGGGAATTTCAAATAGCAAGAAGAAATTCTTGTGGGTGATTAGGCCTGATATAGTTAAAGGTGGAAGTGAAAGATTACTTGTGCCACAAGAAATTATGGAAGAAACAAAAGATAGAGGACTTATGGTAGGTTGGTGTCCACAAGAGAAGGTTCTAAAGCACAAAGCAGTGGGAGGATTTTTGAGTCATTGTGGATGGAATTCAACAATTGAAAGTATATGCAATGGTGTGCCTTTGATTTGTTGTCCATATTTCAATGATCAATTTACCAATTGCAAGTATATTTGTAGTGAATGGAAATTTGGAATGGTGATGGATAGTGAGAATGTGACAAGAGATGAAGTTGAGAAGGTTGTGGTAGAGTTGTTAGAGGGTGAAAAGGGTAAGGAGATGAAAAGAAAAGCAATTGAGTGGAAGAAAATGGCAGAAGAAGCAACTGATTTTGGTGGTTCATCTTGTTTGAATTTGGAAAAAATGGTAAGTGAAGTGTTGTTATTCAAGAGTTAA 1488 0.3656 MSVGCSSFYSCNKMSLLGETMKPHALLIPFPIQGHINPFLKLAKILHSKGFYITFLNTEFNHKRLLKSKASDDLLNGLSDFKFETIPDGLPPTNNMDSTQSIPDLCESTSKHCLVALCELISKLNDPPVTCLISDGIMSFSIQASQQFGLPNVLFWAHSACGFMGFKECRNLMEKGITPLQDASYLTNGHLDTIIDWIPGMKNITLRDLPGIYRTTQPNDSLLNFVAEQIETASKASAIILPTFDALESNVLNELSTMFPKLYTIGPLELFLDKISENNEFESIKCNLWKEESECLKWLDAQEPNSVMYVNFGSVIVMKYNQLVELAWGISNSKKKFLWVIRPDIVKGGSERLLVPQEIMEETKDRGLMVGWCPQEKVLKHKAVGGFLSHCGWNSTIESICNGVPLICCPYFNDQFTNCKYICSEWKFGMVMDSENVTRDEVEKVVVELLEGEKGKEMKRKAIEWKKMAEEATDFGGSSCLNLEKMVSEVLLFKS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4994 495 Gene3D Glycogen Phosphorylase B; 290 471 - -
Psa1g4994 495 PANTHER PUTATIVE-RELATED 20 490 - -
Psa1g4994 495 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 20 490 - -
Psa1g4994 495 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 22 488 - -
Psa1g4994 495 CDD GT1_Gtf-like 23 472 IPR002213 GO:0008194
Psa1g4994 495 ProSitePatterns UDP-glycosyltransferases signature. 372 415 IPR035595 -
Psa1g4994 495 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 284 457 IPR002213 GO:0008194
Psa1g4994 495 Gene3D Glycogen Phosphorylase B; 24 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4994 Psa-Chr1 367259508 367261716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4994 22 492 Glycosyltransferase AT1G22340 50.734 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4994 - - gmx:100813330 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4994 1 367259508 367261716 Psa1g4994 1 367259508 367261716 ECH