LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g4925	ATGGCGTTTCCTGCTTCAATCTCGCTTCCCTCTGATCCCTTCGCTTCAAAGCTTCTTCCTTTATCAAGGATCTCTGTTCCTGCGCAAATTACAGTAAAAATTGAGCTAACCCAGTTGATATCATTAAGAAGAAGTAAGTGTTCTAGTTTAAAGGCTTCGATGGGGTCTCCGGGATTTACCCAGCAACTCAATGACAAAAAGTTAGAGACTTTAGCTGAAGTTAAAGACGGTCGTGATGATATATTTAATGATCTGAAGGATAGATTTTTGAGTTTTAAGAAGAATGTATACATGAAAAACGCCGAACAGTTTGAAAGTCTCGCCAAGGTTCAAGTTCCAAAGTTCATGGTTATTGCCTGTGCAGATTCCAGGGTATGTCCCTCCAGTATTTTGGGATTTCAACCCGGAGAAGCATTCACAATCCGTAATATTGCTAATTTGGTTCCTACCTTCGAGACTGGACCCACAGAAGTAAACGCTGCATTAGAATTTGCGGTAAACACCCTTCTGGTTGAGAACATCTTAGTAATTGGCCACAGCTGCTGCGGGGGTATACGCGCCCTTATGGGCATGGAAGATGATGGCACTACAGGCTTTATAAAAAGTTGGGTTGTTAATGCAAAGAACGCGAAAGTAAAAACCAAGGCTGTTACTTCCAACCTCGATTTTGATGACCAGTGCAAACATTGTGAGAAGGTATCAATTAACCATACCTTGGTAAACCTACTTAGTTACCCTTGGATTAAAGAAAAGGTGGAGAAAGAAGAACTCTCTATCCATGGTGGTTACTATGACTTTACTGACTGTTCATTTGAGAAATGGACATTGGACTATCGGGGAACCAAACTTGAGGAAAACGGAAGAATTGCTACAAAAGATAAAGTATTTTGGTCCTGA	897	0.4091	MAFPASISLPSDPFASKLLPLSRISVPAQITVKIELTQLISLRRSKCSSLKASMGSPGFTQQLNDKKLETLAEVKDGRDDIFNDLKDRFLSFKKNVYMKNAEQFESLAKVQVPKFMVIACADSRVCPSSILGFQPGEAFTIRNIANLVPTFETGPTEVNAALEFAVNTLLVENILVIGHSCCGGIRALMGMEDDGTTGFIKSWVVNAKNAKVKTKAVTSNLDFDDQCKHCEKVSINHTLVNLLSYPWIKEKVEKEELSIHGGYYDFTDCSFEKWTLDYRGTKLEENGRIATKDKVFWS*	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g4925	298	Gene3D	Carbonic anhydrase	72	282	IPR036874	GO:0004089\|GO:0008270
	Psa1g4925	298	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 2.	163	183	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Psa1g4925	298	CDD	beta_CA_cladeB	88	274	IPR045066	GO:0004089\|GO:0008270
	Psa1g4925	298	PANTHER	CARBONIC ANHYDRASE	34	298	-	-
	Psa1g4925	298	PANTHER	CARBONIC ANHYDRASE	34	298	IPR001765	GO:0004089\|GO:0008270
	Psa1g4925	298	SMART	Pro_CA_2	108	275	IPR001765	GO:0004089\|GO:0008270
	Psa1g4925	298	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	120	127	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Psa1g4925	298	SUPERFAMILY	beta-carbonic anhydrase, cab	77	280	IPR036874	GO:0004089\|GO:0008270
	Psa1g4925	298	Pfam	Carbonic anhydrase	116	268	IPR001765	GO:0004089\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g4925	Psa-Chr1	364593479	364596444	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g4925	K01673		-	gmx:100811331	426.017

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa1g4925	1	364593479	364596444	Psa1g4925	1	364593479	364596444	ECH