LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g3709	ATGGCCATGGCGTCTGTGGCTCAGCAACTCACGGGTGTAAAATGGACCCCTCTTCTGTGGAAACCAACTCTAGCGCAAAAGCAAAGACGCAGTGGTGTTCTTCCTATTGTATGTTCCATTGCAATTTCAAGTGCAAATAACAAAGAAAGAGCAAACTTGAAACAACTCTTTGAAGATGCTTATGAGAGGTGCCGCACTGCTCCAATGGAGGGTGTTTCGTTTACTCTTGATCAGTTTACTGGCGCTATAGAGAACTATGACTTTGAGTCTGAAATTGGGGCAAAGATTATCGGCACTGTGTTTGCCACTGAAACTAGTGGAGCTTTTGTTGACATTACTTCAAAGTCCACTGCTTACTTGCCGTTGCGAGAGGCATGCATCCGTCAGATTAAGCATGTAGAAGATGTGGGCATAGTTTCTGGCGTGAAAGAGGAATTTGTAATCATTGGTCAAAATGAAGTTGATGATGGCATGATCTTGAGTTTAAGATCTCTCCAGTATGACCTTGCGTGGGAACGTTGTAGACAACTTCAAGCAGAAGATGCTGTTGTGAAGGGTAAGATTATTGATGCAAATAGAGGTGGTGTGGTGGCTGAAGTTGAAGGCCTTAAAGGATTTGTTCCGTTCTCGCAGATGTCAACGAAATCACCGGGAGAAGAGGTTATTGAGATGGAGATTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCCAGACTTGTCCTTAGCCACCGCAAAGCCGTGGCCGGAATCCAGGGACAATTAGGAATTGGATCAGTAGTTGCTGGCACTGTGCAGAGTCTAAAGCCATATGGTGCTTTCGTTGACATTGGTGGAATCAGTGGTCTCCTTCATGTCAGTCAGATCAGTCATGATCGGATATCGGATATTGAAACTGTTCTTCAACCTGGTGATGTTTTGAAGGTGATGATCTTAAGTCATGACCGAGAGAGAGGCCGAGTAAGTCTTTCAACGAAGAAGTTGGAACCTACACCAGGAGACATGATTCGAAACCCAACTCTTGTGTTCGAGAAGGCGGAGGAGATGGCTCAGACGTTCAGACAGAGAATAGCGCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACGCTAACCAGCGACGGAATCTTAGGACCATTTGGTTCAGATTTGCCTGAAGAGGGACTGGATCTAAGTGAAATACCCCCAGCTGAAGATTAA	1224	0.4551	MAMASVAQQLTGVKWTPLLWKPTLAQKQRRSGVLPIVCSIAISSANNKERANLKQLFEDAYERCRTAPMEGVSFTLDQFTGAIENYDFESEIGAKIIGTVFATETSGAFVDITSKSTAYLPLREACIRQIKHVEDVGIVSGVKEEFVIIGQNEVDDGMILSLRSLQYDLAWERCRQLQAEDAVVKGKIIDANRGGVVAEVEGLKGFVPFSQMSTKSPGEEVIEMEIPLKFVEVDEEQSRLVLSHRKAVAGIQGQLGIGSVVAGTVQSLKPYGAFVDIGGISGLLHVSQISHDRISDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLTSDGILGPFGSDLPEEGLDLSEIPPAED*	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g3709	407	CDD	S1_RPS1_repeat_hs4	258	326	-	-
	Psa1g3709	407	Pfam	S1 RNA binding domain	257	326	IPR003029	GO:0003676
	Psa1g3709	407	Pfam	S1 RNA binding domain	179	245	IPR003029	GO:0003676
	Psa1g3709	407	SUPERFAMILY	Nucleic acid-binding proteins	86	188	IPR012340	-
	Psa1g3709	407	SUPERFAMILY	Nucleic acid-binding proteins	176	248	IPR012340	-
	Psa1g3709	407	Coils	Coil	343	363	-	-
	Psa1g3709	407	Gene3D	-	176	251	IPR012340	-
	Psa1g3709	407	Gene3D	-	76	175	IPR012340	-
	Psa1g3709	407	CDD	S1_RPS1_repeat_ec2_hs2	181	245	-	-
	Psa1g3709	407	PANTHER	30S RIBOSOMAL PROTEIN S1	31	407	-	-
	Psa1g3709	407	SMART	S1_6	256	326	IPR022967	-
	Psa1g3709	407	SMART	S1_6	91	163	IPR022967	-
	Psa1g3709	407	SMART	S1_6	179	245	IPR022967	-
	Psa1g3709	407	ProSiteProfiles	S1 domain profile.	93	163	IPR003029	GO:0003676
	Psa1g3709	407	ProSiteProfiles	S1 domain profile.	181	245	IPR003029	GO:0003676
	Psa1g3709	407	SUPERFAMILY	Nucleic acid-binding proteins	257	336	IPR012340	-
	Psa1g3709	407	ProSiteProfiles	S1 domain profile.	258	326	IPR003029	GO:0003676
	Psa1g3709	407	Gene3D	-	252	330	IPR012340	-
	Psa1g3709	407	PANTHER	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	31	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g3709	Psa-Chr1	312005284	312008045	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g3709	K02945		-	gmx:100806905	627.091

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa1g3709	1	312005284	312008045	Psa1g3709	1	312005284	312008045	ECH