Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3708 ATGGTGAAGGTGCGTATGAACACCGCCGATGTCGCCGCCGAAGTTAAATGCCTCCGAAGGTTAATCGGAATGCGATGCTCCAATGTCTATGATCTCACTCCCAAGACGTACGTTTTCAAGCTAATGAACAGCAGTGGAGTGTCTGAGTCCGGTGAGAGCGAGAAGGTTTTGCTACTCATGGAAAGTGGTGTTAGATTGCACACTACTGTGTATATGCGTGACAAAAGCAACACACCTTCTGGATTTACACTTAAATTGAGGAAACATATTCGTACTAGAAGGCTTGAGGATGTGCGGCAACTTGGGTACGATCGGATTGTTCTTTTTCAATTTGGACTTGGGGAGAATGCAAACTATGTTATATTAGAGCTATATGCTCAAGGCAACATCATACTCACGGATTCTAGTTTCACTGTCATGACTCTGCTTCGATCTCACAGGGATGATGATAAGGGGTTTGCAATCATGTCACGCCATCGTTATCCTATGGAAAGTTGTAGAATTTTTGAACGAACTACAACAACAAAGCTGCAGACAGCCCTAATGTCTTCCAAAGAAGGTGACAATGATGAGACTGTTAAGTCCAGTGGAAATGGAACTGATGTTTCTAATGTAGAGAGAGAGAAGCAGGGATCCCGAAAAGGTGGGAAGTCACATGCCACTTTAAAAATTGTTCTTGGGGAGGCACTCGGTTATGGACCTGCACTTTCTGAACATATGATATTAGATGCTGGTTTGGTTCCCAGTGAAAAAGTGCCCAAAGATAAAACTTGGGATGATGCCACTGTTCAGGCTTTGGTTCAAGCTGTTGCAAAGTTTGAAGATTGGATGCAGGATATCATTTTAGGTGAACTAGTTCCTGAAGGATACATCTTGATGCAAAACAAAAATTTGGGGAAGGATTCTTTTATATTGGAACCAGAAAGTGTTAAACAGATCTATGATGAGTTCTGCCCCATTTTACTTAACCAGTTTAAGTCAAGGGATCATACAAAGTTTGAGACATTTGACGCAGCTTTGGATGAATTCTACAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCACAAGGCCAAAGAAAACTCCGCTCTTCAGAAACTTAGTAAGATACGCAACGATCAGGAAAATCGAGTGCACACTCTGAGGAAAGAAGCTGATCACTGTATTAAAATGGCAGAATTGATAGAATATAACTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTATCTCTTGCTAAGGGTATGAGTTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAATCCAGTAGCTGGTCTTATTGACAAGCTCCATCTTGAAAGGAATTGCATGACTATACTCTTAAGCAACAATCTTGATGAAATGGATGATGAAGAGAAGACACTCCCTGCTGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAACAGGAGAGCAAACAGGAAAAAACTATAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACTCGCCTACAACTTAGTCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGATTATCAGTGGACGTGATGCCCAGCAAAATGAGATGATAGTAAAGCGCTATATGTCAAAAGGAGATCTGTATGTGCATGCTGAACTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAACCTTTGCAGCCAGTTCCGCCACTGACCCTAAACCAAGCAGGATGTTTTACAGTTTGCCATAGCCAGGCATGGGATTCAAAAATGGTTACCAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCACCTACTGGGGAATATCTGACAGTAGGGAGTTTCATGATACGGGGTAAGAAAAATTTTCTTCCGCCACACCCTCTTATCATGGGTTTCGGCCTGCTATTTCGCTTGGATGAGAGTTCTTTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAAACAATAGATGATTATGTTGAAACTGGCCCTGTTGAAGAACAATCTGATTCAGAGTCTGAGAAGGATGTTACTGATGAAAAATCTGCTGCAGATTCGGAAAGGAATGACAATCTATCTGCAGGTTCACTCGTACCCCCAACAGAAGACGTTCTTAAAGACTCGTCTCAAAATAGTTTGCCTACAACAATTAATGCCAAAACTGATGTCTCAGATGATTTCTCTGCCAAAGATTCAAGTACAACGAATATGCTTGATAGTGAGATATTATCCAACATTGGTGGAAATGGCTTAGCATCTGTCTCCCCTCAACTTGAAGAACTTATTGATCGAGCTCTGGGCCTTGGATCTGTTGCCAAATCAAATAAAAGTTATGAAGCTGAGAACACCCGGGTTGATTTAAGCAGTGAGCACTATATTGAACCGAGCAAACCTGCAGTAAGGGATAAACCATATATATCGAAAGCTGAGAGAAGAAAGCTTAAAAATGAACCGAAACATGGAGAAGCATATCCAAGTGTTGAGCATGGAAAGGACGAATTAAAAATAAAAGATATTTCTGATAATCTGCATGCAAAAGATGCTCAAAATTTGAAGACAGGAGGTAGTAAAAAAATCAGCCGTGGACAGAAAGGAAAACTTAAGAAGATAAAGGAGAAGTATGCCGACCAAGATGAGGAAGAAAGGAAGATCCGAATGACATTATTGGCTTCTTCTGGAAAACCAATCAAGAAGGAAGAGACATCATCTGGAAATGAAGCATCAGCTTCAGATAAAGGGAAAAAATCTGACAGTGGTCCTATAGATGCTCCAAAAATATGCTACAAGTGTAAGAAGTTAGGTCATTTATCTCGGGATTGTAAGGAGCAATCAAATGATCTGTCGCACAGTCATGCAACCAGTGAAGCTGAAGAAAATCCCAACATGAGTGCTTCAAACACTTCCTTAGAAGATAGAGTGGCAATGGAAGAAGATGATATTCACGAAATTGGAGAAGAAGAGAAAGAAAAACTAAATGACGTGGATTACTTGACAGGGAATCCACTCCCGAATGACATTCTCTTATATGCTATTCCTGTATGTGGTCCATACAATGCAGTTCAGTCTTACAAGTATCGAGTGAAGATAATTCCTGGACCTGTGAAGAAAGGAAAAGCTGCAAAAACTGCAATGAACTTATTCAGCCACATATCAGAAGCAACAAATCGGGAGAAGGAGTTGATGAAAGCCTGTACTGATCCTGAATTAGTTGCTTCAATTGTTGGTAATGTGAAGATAACTGCAGCTGGACTGACTCAATTAAAGCAAAAACAAAAGAAAGGCAAGAAGAGTGCCAAACAAGGGAGTTAG 3420 0.4079 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIVLFQFGLGENANYVILELYAQGNIILTDSSFTVMTLLRSHRDDDKGFAIMSRHRYPMESCRIFERTTTTKLQTALMSSKEGDNDETVKSSGNGTDVSNVEREKQGSRKGGKSHATLKIVLGEALGYGPALSEHMILDAGLVPSEKVPKDKTWDDATVQALVQAVAKFEDWMQDIILGELVPEGYILMQNKNLGKDSFILEPESVKQIYDEFCPILLNQFKSRDHTKFETFDAALDEFYSKIESQRSEQQHKAKENSALQKLSKIRNDQENRVHTLRKEADHCIKMAELIEYNLEDVDAAILAVRVSLAKGMSWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTILLSNNLDEMDDEEKTLPADKVEVDLALSAHANARRWYEQKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVASISHMRKVHWFEKFNWFISSENYLIISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPLQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEETIDDYVETGPVEEQSDSESEKDVTDEKSAADSERNDNLSAGSLVPPTEDVLKDSSQNSLPTTINAKTDVSDDFSAKDSSTTNMLDSEILSNIGGNGLASVSPQLEELIDRALGLGSVAKSNKSYEAENTRVDLSSEHYIEPSKPAVRDKPYISKAERRKLKNEPKHGEAYPSVEHGKDELKIKDISDNLHAKDAQNLKTGGSKKISRGQKGKLKKIKEKYADQDEEERKIRMTLLASSGKPIKKEETSSGNEASASDKGKKSDSGPIDAPKICYKCKKLGHLSRDCKEQSNDLSHSHATSEAEENPNMSASNTSLEDRVAMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAIPVCGPYNAVQSYKYRVKIIPGPVKKGKAAKTAMNLFSHISEATNREKELMKACTDPELVASIVGNVKITAAGLTQLKQKQKKGKKSAKQGS* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3708 1139 SUPERFAMILY Retrovirus zinc finger-like domains 956 985 IPR036875 GO:0003676|GO:0008270
Psa1g3708 1139 MobiDBLite consensus disorder prediction 182 216 - -
Psa1g3708 1139 Gene3D - 904 996 - -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 740 756 - -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 991 1006 - -
Psa1g3708 1139 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 847 870 - -
Psa1g3708 1139 Pfam NFACT protein C-terminal domain 1024 1116 IPR021846 -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 889 955 - -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 705 724 - -
Psa1g3708 1139 PANTHER - 3 1127 - -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 978 1006 - -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 906 924 - -
Psa1g3708 1139 ProSiteProfiles Zinc finger CCHC-type profile. 964 979 IPR001878 GO:0003676|GO:0008270
Psa1g3708 1139 MobiDBLite consensus disorder prediction 681 756 - -
Psa1g3708 1139 Pfam NFACT N-terminal and middle domains 10 161 - -
Psa1g3708 1139 Pfam NFACT N-terminal and middle domains 220 523 - -
Psa1g3708 1139 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1127 - -
Psa1g3708 1139 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Psa1g3708 1139 MobiDBLite consensus disorder prediction 936 955 - -
Psa1g3708 1139 SMART c2hcfinal6 963 979 IPR001878 GO:0003676|GO:0008270
Psa1g3708 1139 Coils Coil 364 384 - -
Psa1g3708 1139 Pfam Zinc knuckle 963 979 IPR001878 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3708 K24971 - gmx:100807437 1849.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3708 1 311982706 311992052 Psa1g3708 1 311982706 311992052 ECH