Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3647 ATGAATTCCAAATGGATATTTTTTCTACTAACCATTTCAACAATGTTAGTACTAGGAAAAACACAATCAATATCATCAGAGAAAGCATTGGTGAAAACAGTAAAGGGAAAGAAACTATGTGACAGAGGGTGGGAATGTAAAGGTTGGTCTGAGTATTGTTGCAACGAAACCATCTCTGATTATCTTCAAACATACCAGTTTGAGAATTTGTTCTCAAAGAGGAATGATCCAACGGCACATGCTGTTGGATTTTGGGATTATCGTTCTTTTATTACCGCTGCTGCACTTTATCAGCCTCTTGGGTTTGGTACTTCTGGTGGAAAACATGGTGGACAGAAAGAAGTTGCGGCTTTTCTTGGTCATGTTGGAAGCAAAACCTCTTGTGGTTATGGTGTAGCTACTGGTGGACCCTTTGCATGGGGCTTATGCTATAATAAGGAGTTGAGTCCTGATCAATTTTATTGCGATGACTACTACAAATTAACCTATCCATGTAGTCCCGGCGCAGCATACTATGGCCGTGGCGCCATACCAATTTACTGGAATTACAACTATGGGAAGATTGGAGAAGCCTTAAAGGTGGATCTATTGAACCATCCGGAATACATAGAACAAAATGCAACATTGGCATTCCAAGCAGCACTATGGAAATGGATGACACCACCTGAGAAGCACATACCATCAGCCCATGATGTTTTTGTTGGAGATTGGAAGCCAACAAAAAATGACACTTTGTCCAAAAGGGTACCTGGATTTGGTGCCACAATCAATGTTTTATATGGTGATCAAGTTTGTGGGCAAGGTTCTGATAATGAAGCAATGAATAACATAATTTCTCATTATCTTTATTACCTTGATTTATTGGGAGTTGGTAGAGAAGAGGCAGGGCCTAATGAAATTCTCTCTTGTGCTGAACAAGCTGCTTTTAAACCCTCTGGACCACCTTCATCTTCAACAACTTGA 963 0.4019 MNSKWIFFLLTISTMLVLGKTQSISSEKALVKTVKGKKLCDRGWECKGWSEYCCNETISDYLQTYQFENLFSKRNDPTAHAVGFWDYRSFITAAALYQPLGFGTSGGKHGGQKEVAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDQFYCDDYYKLTYPCSPGAAYYGRGAIPIYWNYNYGKIGEALKVDLLNHPEYIEQNATLAFQAALWKWMTPPEKHIPSAHDVFVGDWKPTKNDTLSKRVPGFGATINVLYGDQVCGQGSDNEAMNNIISHYLYYLDLLGVGREEAGPNEILSCAEQAAFKPSGPPSSSTT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3647 320 Gene3D Endochitinase, domain 2 146 205 - -
Psa1g3647 320 Gene3D - 66 309 - -
Psa1g3647 320 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Psa1g3647 320 PANTHER CHITINASE-LIKE PROTEIN 1 10 313 - -
Psa1g3647 320 CDD chitinase_GH19 66 303 - -
Psa1g3647 320 SUPERFAMILY Lysozyme-like 58 309 IPR023346 -
Psa1g3647 320 Pfam Chitinase class I 65 293 IPR000726 GO:0004568|GO:0006032|GO:0016998
Psa1g3647 320 PANTHER CHITINASE-RELATED 10 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3647 Psa-Chr1 308888615 308890615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3647 23 309 Glycoside Hydrolase AT3G16920 81.533 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3647 - - gmx:100805300 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3647 1 308888615 308890615 Psa1g3647 1 308888615 308890615 ECH