Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3644 ATGAAGCATGTATTAAAGTCCATCAACTTTGCATATTTTTCTAAATTATTGTTTAGCGATAATCGACCAAACATTAGGTGTTTAATGATGCTTATCAACATCTCTATTTTCAACAAGTCCTTTCCCATTACGGTTGTGTCGGATGAAGCAAGAGCAATGTACAATGGTGGTGCAGCAGGGTTGACTTATTGGAGTCCTAATGTAAATATTTTCCGCGATCCACGGTGGGGCCGTGGCCAAGAGACACCCGGCGAAGACCCCACATTGGCCGCAAAATATGCGGCCAGCTACGTTCAAGGTCTACAAGGCAACGGCGCGGGTAACCGACTCAAGGTTGCCGCTTGTTGTAAACACTACACAGCTTATGATCTTGATAATTGGAATGGTGTAGACAGGTTTCATTTCAATGCCAAGGTGAGTAAACAGGATTTAGCAGACACATATGATGTACCATTCAAGGCGTGTGTGTCAGAAGGGAATGTGGCGAGTGTAATGTGTTCCTACAATCAAGTCAATGGCAAGCCCACTTGTGCTGATCCCGAACTTCTTCGCAACACCATCCGTGGCGAATGGCGCCTCAATGGGTACATAGTTTCAGACTGTGACTCGGTCGGAGTTTACTACGACACCCAACACTACACAAAAACACCGGAAGAGGCTGCAGCCGATGCGATTAAAGCAGGCTTGGATTTAGATTGTGGCCCATTTTTAGCCCTACATACTGATGGTGCTATTAGGCAAGGACTTATGTCTGAAAATGATCTTAACAATGCTTTAGCTAACCTTATTACAGTTCAAATGAGATTGGGTATGTTTGACGGAGAGCCTTCGGCCCAACCATATGGGAATTTAGGCCCAAGAGATGTTTGTTTACCTGCCCATAATGAACTTGCAGTTGAAGCAGCTAGACAGGGCATTGTTCTTCTGCAAAACAAAGGAAATGCATTGCCATTATCCCCAACACGCTTCCGCACCATAGGAGTCATTGGTCCCAATTCTGATGTTACTGTTACAATGATTGGAAACTATGCTGGTGTGGCATGTGGCTATACAACACCGTTGCAAGGTATTGCCAGATACGCGAGGACCATTCATCAGGTAGGATGTAGAGATGTGAGTTGTGGTGGGAACCAGCTATTTGGGCTGGCAGAGACAGTAGCAAGACAAGGTGATGCAACAGTATTAGTAATGGGCTTAGACCAGTCCATAGAAGCTGAATTTAGAGATAGGGTTGGGCTTCTTTTACCAGGCCATCAACAAGAGCTAGTGTCTAGAGTAGCTAGGGCTGCAAGAGGCCCAGTTATATTGGTTCTCATGTCTGGTGGGCCTATTGATGTTACATTTGCTAAAAATGATCCCAAAATTAGTGCTATTCTGTGGGTTGGTTATCCTGGTCAATCTGGAGGAACTGCTATTGCTGATGTTATCTTTGGCAGAACCAACCCAGGAGGAAGGTTACCCAATACATGGTACCCACAAAATTATGTGAGCAAAGTGCCAATGACAAACATGGACATGCGTCCAAACCCGGCAATAGGGTACCCAGGAAGAACCTATAGATTCTACAAGGGCCCAGTAGTGTTCCCATTTGGGCATGGGCTAAGTTACTCAAGATACACTCATACCTTAGCACTTGCTCCCAAACAAGTCTCAGTCCCTTATGTATCCCTCCAGGCCCAAGCCTTCGCAAACTCAACTAACAAAGCAATAAAAGTGAGTCATGCAAAATGTGATGAATTGGAAGTAGGTTTCCATGTGGATGTGAAAAATGAAGGGTCAATGGATGGAGCCCACACACTTCTAATATTCTCAAAACCACCTAATGGAGTTAAACAATTGGTGAACTTTCATAAGACTTATGTTCCTGCTGGATCAAAGACACGTGTTAAGGTTGGTGTTCATGTTTGTAACCACCTCTCTGTTGTCGATGAGTTTGGGATTCGAAGAATCCCAATGGGTGAACATGAACTTCACATCGGTGATCTAAAACATTCTATTTTGGTTCAAACTATGGACCAAATTAAACATTAA 2031 0.4407 MKHVLKSINFAYFSKLLFSDNRPNIRCLMMLINISIFNKSFPITVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGNGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLADTYDVPFKACVSEGNVASVMCSYNQVNGKPTCADPELLRNTIRGEWRLNGYIVSDCDSVGVYYDTQHYTKTPEEAAADAIKAGLDLDCGPFLALHTDGAIRQGLMSENDLNNALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCLPAHNELAVEAARQGIVLLQNKGNALPLSPTRFRTIGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYARTIHQVGCRDVSCGGNQLFGLAETVARQGDATVLVMGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVILVLMSGGPIDVTFAKNDPKISAILWVGYPGQSGGTAIADVIFGRTNPGGRLPNTWYPQNYVSKVPMTNMDMRPNPAIGYPGRTYRFYKGPVVFPFGHGLSYSRYTHTLALAPKQVSVPYVSLQAQAFANSTNKAIKVSHAKCDELEVGFHVDVKNEGSMDGAHTLLIFSKPPNGVKQLVNFHKTYVPAGSKTRVKVGVHVCNHLSVVDEFGIRRIPMGEHELHIGDLKHSILVQTMDQIKH* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3644 676 PRINTS Glycosyl hydrolase family 3 signature 75 91 IPR001764 GO:0004553|GO:0005975
Psa1g3644 676 PRINTS Glycosyl hydrolase family 3 signature 112 128 IPR001764 GO:0004553|GO:0005975
Psa1g3644 676 PRINTS Glycosyl hydrolase family 3 signature 186 204 IPR001764 GO:0004553|GO:0005975
Psa1g3644 676 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 306 539 IPR036881 GO:0004553|GO:0005975
Psa1g3644 676 Pfam Glycosyl hydrolase family 3 N terminal domain 62 259 IPR001764 GO:0004553|GO:0005975
Psa1g3644 676 Gene3D - 292 537 IPR036881 GO:0004553|GO:0005975
Psa1g3644 676 PANTHER BETA-D-XYLOSIDASE 1 44 671 - -
Psa1g3644 676 Pfam Fibronectin type III-like domain 609 661 IPR026891 -
Psa1g3644 676 SUPERFAMILY (Trans)glycosidases 47 305 IPR017853 -
Psa1g3644 676 SMART Fn3_like_2 598 663 IPR026891 -
Psa1g3644 676 Pfam Glycosyl hydrolase family 3 C-terminal domain 306 536 IPR002772 GO:0004553|GO:0005975
Psa1g3644 676 Gene3D Immunoglobulins 561 676 IPR013783 -
Psa1g3644 676 Gene3D - 43 280 IPR036962 GO:0004553|GO:0005975
Psa1g3644 676 PANTHER SUGAR HYDROLASE-RELATED 44 671 IPR044993 GO:0009044|GO:0045493
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3644 Psa-Chr1 308647316 308651112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3644 45 669 Glycoside Hydrolase AT5G49360 72.126 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3644 - - gmx:100805839 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3644 1 308647316 308651112 Psa1g3644 1 308647316 308651112 ECH