Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3581 ATGGGTGTTTTTAATGTTGAAGATGAAATCACTTCTGTTGTAGCACCTGCTATACTCTACAAAGCTCTAGTTACAGATGCTGACACTCTTACTCCAAAGGTTATTGATGCCATCAAAAGTATCGAAATTGTTGAAGGAAACGGAGGTGCTGGAACCATCAAGAAACTCACTTTCGTTGAAGATGGTGAAACCAAACATGTGTTGCACAAAGTGGAGTTAGTAGATGTTGCTAACTTGGCTTACAACTATAGCATAGTTGGTGGTGTTGGATTTCCAGACACAGTTGAGAAGATCTCATTTGAGGCTAAACTGTCTGCAGGACCAAATGGAGGATCCATTGCAAAGCTGAGTGTGAAATATTACACAAAAGGTGATGCTGCTGCTCCTACTGAAGAGCAACTCAAGAGTGACAAAGCTAAGGGTGATGGTCTTTTCAAGGCTCTTGAGGGTTACTGTTTGGCTCATCCTGATTACAACTAA 480 0.4125 MGVFNVEDEITSVVAPAILYKALVTDADTLTPKVIDAIKSIEIVEGNGGAGTIKKLTFVEDGETKHVLHKVELVDVANLAYNYSIVGGVGFPDTVEKISFEAKLSAGPNGGSIAKLSVKYYTKGDAAAPTEEQLKSDKAKGDGLFKALEGYCLAHPDYN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3581 159 PANTHER - 1 158 - -
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 PANTHER ABA-RESPONSIVE PROTEIN 1 158 - -
Psa1g3581 159 Gene3D - 2 159 IPR023393 -
Psa1g3581 159 CDD Bet_v1-like 4 151 - -
Psa1g3581 159 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Psa1g3581 159 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Psa1g3581 159 SUPERFAMILY Bet v1-like 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3581 Psa-Chr1 306397415 306398506 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3581 - - gmx:100500525 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3581 1 306397415 306398506 Psa1g3581 1 306397415 306398506 ECH