Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3565 GTGGCATTGCTCTTGCTTTTGGCATTGAGCAATGCCTCGAAAGTTTATGGAGATTTCGAGCAGTGTGGTTTGAATCCGAAATTGGATCCTAGACCACACACTGTCTCGATTTTGGAGTTCGGTGCGGTTGGTGATGGTAAGACACTGAATACACTTGCGTTACAGAATGCAATTTTCTATGTCAAGTCATTCGCTGATAAGGGCGGTGCTCAGCTCTATGTGCCACCGGGAAAATGGCTCACCGGAAGTTTCAATCTTACCAGCCATCTCACCCTCTTTTTAGAGAAAGGCGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTGTTGAACCTTTACCTTCGTATGGGCGAGGGAAAGATGTTCCTGAAGGAAGATACAAGAGTTTAATCAACGGTTACAAGTTGGAGGATGTGGTTATAACAGGAAATAACGGAACCATTGACGGCATGGGATCGGTTTGGTGGGAATGGTATAATTCTCACTCGCTCAACCATAGTCGTCCTCATTTGGTAGAAATTATATCATCCAATTCTGTCGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATTCACCCGGTTTATTGCAGCAATGTACATATTCAAAATGTTTCAATCTCCACTCCACCAGAATCCCCTTATACCGCCGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATAGTAATGTATCCATTGGCTATGATGCAATATCTCTCAAAAGTGGCTGGGATCAGTACGGCATAACCTATGGAAGACCGGCCGAGAAAATACACATAAGAAGGGTTCATCTTCACGCATTTTCCGGCTCTGCTATTTCATTCGGTACTGAAATGTCAGGTGGAATTTCAAACGTTCTAATCAAGCATGTTCACATTTTCAACTCGAATAGCGGCATTGAGTTCAGAACAATCAAAGGAAGAGGCGGTTACGTTAAACAAATCGTCATATCCAACATCAAAATGGAAAATGTTCATACAGCAATTTCAGCCAAAGGAAATTGTGGTTCTCACCCCGACGACAAATTCGATCCAAAAGCACTTCCACTTTTGAATCACATTACTTTGAAGGATATTATCGGAACAAATATCACAATTGCTGGAAACTTTAGCGGCATCGAAGAATCACCCTTCACCGATATCTGCCTTTCAAACATAACATTGTCCACAAATTCGGTTTCTTCCACTACATGGGAATGTTCAAATGTCTCCGGATTTTCAGACTCAGTGCTCCCTAAACCTTGTCAAGAACTCAGTAAACCTTCAAACTCTTCTTCCTCGTCGTGTTTCTATCTCATGAGTCTCGGTGAACAAAAATCTGCAGGGCTTTAA 1356 0.4181 VALLLLLALSNASKVYGDFEQCGLNPKLDPRPHTVSILEFGAVGDGKTLNTLALQNAIFYVKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVVEPLPSYGRGKDVPEGRYKSLINGYKLEDVVITGNNGTIDGMGSVWWEWYNSHSLNHSRPHLVEIISSNSVVVSNLTFLNAPAYSIHPVYCSNVHIQNVSISTPPESPYTAGIVPDSSDNVCIEDSNVSIGYDAISLKSGWDQYGITYGRPAEKIHIRRVHLHAFSGSAISFGTEMSGGISNVLIKHVHIFNSNSGIEFRTIKGRGGYVKQIVISNIKMENVHTAISAKGNCGSHPDDKFDPKALPLLNHITLKDIIGTNITIAGNFSGIEESPFTDICLSNITLSTNSVSSTTWECSNVSGFSDSVLPKPCQELSKPSNSSSSSCFYLMSLGEQKSAGL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3565 451 Gene3D - 24 418 IPR012334 -
Psa1g3565 451 PANTHER PECTIN LYASE-RELATED 1 444 - -
Psa1g3565 451 Pfam Glycosyl hydrolases family 28 130 412 IPR000743 GO:0004650|GO:0005975
Psa1g3565 451 SUPERFAMILY Pectin lyase-like 30 426 IPR011050 -
Psa1g3565 451 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 1 444 - -
Psa1g3565 451 SMART pbh1 263 285 IPR006626 -
Psa1g3565 451 SMART pbh1 229 250 IPR006626 -
Psa1g3565 451 SMART pbh1 291 312 IPR006626 -
Psa1g3565 451 SMART pbh1 202 228 IPR006626 -
Psa1g3565 451 SMART pbh1 320 341 IPR006626 -
Psa1g3565 451 SMART pbh1 179 201 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3565 Psa-Chr1 306044405 306046366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3565 1 438 Glycoside Hydrolase AT3G16850 63.326 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3565 - - gmx:100806574 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3565 1 306044405 306046366 Psa1g3565 1 306044405 306046366 ECH