Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3542 ATGCTTGCTCAAGAGAAATCCCAAAAGATATACCCGACAACTGCTGAGGTAGTGGAGGAGCTAAAGAGAATGGTGGACATAGGCTTTCCAATAGCAGCCATGAGCCTAGTAGGATACCTCAAAAACATGATCTTAGTTGTATGCATGGGAAAGTTGGGAAGCCTTGAGTTAGCAAGTGGTGCTTTAGCCATAGGCTTCACCAACATAACCGGTTACTCGGTCCTTTCAGGTCTAGCCATGGGAATGGAGCCTCTATGTACTCAAGCCATTGGTTCACAAAACTTCTCCTTAGTCTCTCTCATATTAAGAAGAACAATCCTCATGTTATTACTAGCTTCCTTACCTATTTCACTCTTGTGGCTCAATCTCGAACCGTTCATGCTATGCCTTCATCAAAATCAAGACATAACAAGAATAGCAAGCCTATATTGCCGCCTCTCGATCCCCGATCTTATAGCGAATAGCTTCCTTCACCCGATTCGAATCTATTTACGCAGCAAAGGTACAACTTGGCCGCTATTGTGGTGCACTTCACTTTCCATTATCATTCACATCCCTTTTGTCATTTTTTTAACCTTCAAACTTCACCTTGGTGTGCAAGGTATTGCTATTTCAGCTTTTGTCGCAAATTTCAACACCCTTTTCTTTCTTTTATCATACATGTTCTACATGCATGTCTCAAAGGTTTCAATCTCCATACCTAACCCTACCCCTCCCTTGCTACAAGTAAAACCTACAAGTGTTAAAACCCTAGGAAAAGAATGGAGCATGTTAATAAGGTTTTCTATTCAAAGTTGTCTTGGAGTGTGCTTAGAATGGTGGTGGTATGAATTCATGACAATTCTAGCTGGTTACCTTTATAACCCTCGTGTAGCTTTAGCTACGGCTGGAATAGTGATACAAACAACATCACTTATGTACACTATACCGACGGCACTCAGTGCGTCCGTATCAACAAGAGTAGGAAATGAACTTGGAGCTGGTCAACCATCAAAGGCAAATCTATCAACCATGGTAGCAATAGGAATGGCACTAGCAAGTTCAACTTTGGGACTATTATGGACAACATTAGGGAGAGAAAAATGGGGGAAGGTGTTCACAAATGACAAAGAGATTTTGGAGTTGACAATGGTTGTTTTACCTATAATTGGTGTTTGTGAGTTAGCAAATTGTCCACAAACAACAAGTTGTGGAATACTTAGAGGGAGTGCAAGGCCAGGTATTGGGGCAGGGATAAATTTTTATTCATTTTATCTTGTGGGGGCGCCAATAGGAATAGTGTTGGGGTTTGTTTTGAAATTAGGGTTGGTGGGGTTTTGTTATGGTTTGTTGGCAGCACAAATTGCATGTGTGGTTTCAATTCTAGTTGTGGTATATAACACTGATTGGGAAAGAGAGTCATTGAAGGCAAAAAACTTGGTGGGTAAAGGTGGTTCATGTGACACATTATTTGCACATGTTGTTGTTGAAGACCAAACAGTCAAATGTGAGCAAGGTATTGTCTTTCTCAATGAAAACAAGTGA 1524 0.4088 MLAQEKSQKIYPTTAEVVEELKRMVDIGFPIAAMSLVGYLKNMILVVCMGKLGSLELASGALAIGFTNITGYSVLSGLAMGMEPLCTQAIGSQNFSLVSLILRRTILMLLLASLPISLLWLNLEPFMLCLHQNQDITRIASLYCRLSIPDLIANSFLHPIRIYLRSKGTTWPLLWCTSLSIIIHIPFVIFLTFKLHLGVQGIAISAFVANFNTLFFLLSYMFYMHVSKVSISIPNPTPPLLQVKPTSVKTLGKEWSMLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTIPTALSASVSTRVGNELGAGQPSKANLSTMVAIGMALASSTLGLLWTTLGREKWGKVFTNDKEILELTMVVLPIIGVCELANCPQTTSCGILRGSARPGIGAGINFYSFYLVGAPIGIVLGFVLKLGLVGFCYGLLAAQIACVVSILVVVYNTDWERESLKAKNLVGKGGSCDTLFAHVVVEDQTVKCEQGIVFLNENK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3542 507 Pfam MatE 30 188 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa1g3542 507 Pfam MatE 266 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa1g3542 507 PANTHER PROTEIN DETOXIFICATION 55 12 479 - -
Psa1g3542 507 TIGRFAM matE: MATE efflux family protein 30 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa1g3542 507 CDD MATE_eukaryotic 20 469 IPR045069 GO:0042910|GO:1990961
Psa1g3542 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3542 Psa-Chr1 305092954 305095659 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3542 K03327 - gmx:100785533 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3542 1 305092954 305095659 Psa1g3542 1 305092954 305095659 ECH