Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3530 ATGTCACATTGTACGGTACTTCTCCAAATTCTTAAACATTGTAAAACTTCTTTGGATTCCAAAACCCTTGCAAAAACTCACGCAAGGGTCACTGTACTTGGTTATGCCACATACCCATCTCTTGAAGCGTCTCTAATATCAACCTATGCACATTGTCACCAACCCCACATAGCCCATCATGTGTTTTCCCGAGTTATGAATTTGTTCAACATGAATTTGGTGATTGAAAATCTAGTGAAATCTGGAGAATGTGATATTGCCAAGAAGATGTTTGATAAAACGCCTGTTCGAGATGTGGTTACTTGGAACACCATCATTGGAGGTTATGTTAAGAATTCTCGCTTTCTTGATGCGTTGAGTATTTTCCGCGGTATGATGAACGCCAAGGTTGAGCCTGATGGGTTTACCTTTGCTTCTGTGGTTACCGGGTGTGCTCGCCTTGGTTCGTTTTGCAATGCCAAATGGGTGCATGGTTTAATGGTTGAGAAAAGGGTTGAATTGAATTATATACTCAGTGCTGCGTTGGTTGACATGTATGCTAAGTGTGGCAGGATTGATGTTTCAAAGCGGGTTTTTGAAAGTGTGGTGCGTGATCACGTGTCTGTTTGGAATGCTATGATTAATGGGTTTGCCGTTCACGGGCTTGCTTTGGATGCAACTGCGGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGCCGGATTCTGTTACTTTTGTTGGGATTCTGAAAGCTTGTAGCCATTGTGGGTTAGTTGAGGTAGGTCGCAAGTACTTTGAAATGATGCAGAATCAGTTTTTGATTCAGCCGCAGCTTGAGCATTATGGGACCATGGTTGATCTCTTGGGACGAGCAGGGCATTTGGAAGAGGCGTATTCTATGGTTAAGGCGATGTCGGTGGAGCCTGATGTTGTTATTTGGAGATCACTTCTGAGTGCGTGTAGAATTCACGGAAAGAAAGAACTTGGTGAATTTGCTATTGCGAATATTTCGCGCCTTGAGAGCGGAGATTTTGTCTTGCTGTCAAACATGTATTGCTCTTTCAAAAACTGGCATGGTGCTGAGAGGGTGAGACAGATGATGAAAAAGGGAGGAGTTCATAAAAAGCGTGGTAAGAGTTGGATTGAATTTGGGAGCAGCATTCACCAATTCAATGCTGCTGATCAGTCACATGCTGAAACGAAAGCAATTTACAGGGTGCTGGAAGGTTTGATGCAGAGAGCTAAACTGGAGGGATTCACACCCTTGACGGATCTAGTTTTGATGGATGTGTCTGAAGAGGAAAAGGAGGAAAATTTATCATTGCATAGCGAGAAATTGGCTTTGGCCTACGGTGTTCTGAAAAGTAGCCCGGGAACAAAAATCATGATTTCCAAGAACCTGCGTATATGTCAAGACTGTCATAATTGGATTAAAATTGTGTCAAGAATATTAAACAGAGAGATAATTGTGAGAGATCGCATCCGTTTTCATCAATTTGAAGGTGGATTTTGCTCTTGTGGAGACTACTGGTAG 1512 0.4239 MSHCTVLLQILKHCKTSLDSKTLAKTHARVTVLGYATYPSLEASLISTYAHCHQPHIAHHVFSRVMNLFNMNLVIENLVKSGECDIAKKMFDKTPVRDVVTWNTIIGGYVKNSRFLDALSIFRGMMNAKVEPDGFTFASVVTGCARLGSFCNAKWVHGLMVEKRVELNYILSAALVDMYAKCGRIDVSKRVFESVVRDHVSVWNAMINGFAVHGLALDATAVFSRMEVENVLPDSVTFVGILKACSHCGLVEVGRKYFEMMQNQFLIQPQLEHYGTMVDLLGRAGHLEEAYSMVKAMSVEPDVVIWRSLLSACRIHGKKELGEFAIANISRLESGDFVLLSNMYCSFKNWHGAERVRQMMKKGGVHKKRGKSWIEFGSSIHQFNAADQSHAETKAIYRVLEGLMQRAKLEGFTPLTDLVLMDVSEEEKEENLSLHSEKLALAYGVLKSSPGTKIMISKNLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGFCSCGDYW* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3530 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Psa1g3530 503 Pfam E motif 316 375 IPR046848 -
Psa1g3530 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Psa1g3530 503 Gene3D Tetratricopeptide repeat domain 189 398 IPR011990 GO:0005515
Psa1g3530 503 Pfam PPR repeat 273 297 IPR002885 -
Psa1g3530 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 449 - -
Psa1g3530 503 TIGRFAM PPR: pentatricopeptide repeat domain 100 133 IPR002885 -
Psa1g3530 503 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Psa1g3530 503 Pfam PPR repeat family 97 146 IPR002885 -
Psa1g3530 503 Pfam PPR repeat family 200 246 IPR002885 -
Psa1g3530 503 Pfam DYW family of nucleic acid deaminases 411 503 IPR032867 GO:0008270
Psa1g3530 503 Gene3D Tetratricopeptide repeat domain 6 176 IPR011990 GO:0005515
Psa1g3530 503 PANTHER OS07G0578800 PROTEIN-RELATED 4 449 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3530 Psa-Chr1 304027573 304029680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3530 72 503 Glycoside Hydrolase AT3G49170 39.180 6.05e-104 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3530 - - lang:109344997 830.861