Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3528 ATGGAGGTAGAACCAGTAGAACCGCAATCACTGAAGAAGCTAAGCTTCAAGTCTCTCAAACGCGCCCTCGACCTCTTCTCCCCGGTTCATCAACAACTTGCTCCTCCCGATCTCGAAAGCAAGAAAATTCGTATCAATTACAAGGTCAATGCTGAGTATGGTGGAATTAAAAACACTGCTCAACCTCCCCAGCAGACAAATTCTGCCGCAAAGGATAATTCTCAACAAGCAGGGTCTTCTAACACGCTTGCTCTTCCCGGTCCAGGAAATTCGGATCTTCAGAAAGGAGGGCCCCAAAAAGCTTTGGTTGTTGGTCCAGCTATGCCATCCACAGCAACGAACGGTCTTGGTTCTCAGGGAAAAAGTACAGTAGTTGTTTCTTCCTCTGGCTCATCCGAAAGGAATTTCTCAACATCTGCTCTGATGGAAAGAATGCCAAGTAAATGGCCACGACCTGTGTGGCATGCACCATGGAAAAATTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTAATACATGGTTTGCCACTGGTTCTGCAGATCGAACTATCAAGATATGGGACCTGGCAAGTGGTGTTCTAAAGCTCACGTTAACAGGCCACATCGAACAAGTAAGAGGCCTTGCTATTAGCAACAAACATACGTACATGTTTTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCACGGCCATCTGAGTGGTGTTTATTGCTTGGCTATTCATCCCACAATTGACATTTTGCTGACTGGGGGACGTGATTCTGTCTGCCGGGTCTGGGACATACGTAGTAAAATGCAGATTCACGCTCTTTCAGGTCACGAGAACACTGTCTGCTCTGTGTTCACACGACCAACGGACCCTCAAGTTGTCACTGGTTCTCATGATTCTACAATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTTAACGCTTACAAACCATAAAAAGTCGGTTCGAGCTATGGCTCCACATCCTAAAGAGCAAGCTTTTGCATCTGCATCGGCTGATAATATTAAAAAGTTCACCCTTCCAAAAGGAGAATTTTGTCACAATATGCTTTCTCAACAGAAAACTATTATCAATGCAATGGCTGTCAATGAGGAGGGTGTGATGGTTACTGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCATAATTTCCAGCAATCTCAAACAATTGTACAACCTGGTTCACTGGACAGCGAGGCTGGTATCTATGCTTTAACCTATGATGTCACGGGTACAAGGCTTATATCATGCGAAGCCGACAAGACCATAAAAATGTGGAAAGAAGATGACAATGCCACACCAGAAACACATCCCCTTAACTTCAGGCCTCCTAAAGACATTCGTCGTTTCTAG 1437 0.4468 MEVEPVEPQSLKKLSFKSLKRALDLFSPVHQQLAPPDLESKKIRINYKVNAEYGGIKNTAQPPQQTNSAAKDNSQQAGSSNTLALPGPGNSDLQKGGPQKALVVGPAMPSTATNGLGSQGKSTVVVSSSGSSERNFSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVDPSNTWFATGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAISNKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLAIHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHENTVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAPHPKEQAFASASADNIKKFTLPKGEFCHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALTYDVTGTRLISCEADKTIKMWKEDDNATPETHPLNFRPPKDIRRF* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3528 478 MobiDBLite consensus disorder prediction 459 478 - -
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 289 IPR001680 GO:0005515
Psa1g3528 478 PRINTS G protein beta WD-40 repeat signature 183 197 IPR020472 -
Psa1g3528 478 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Psa1g3528 478 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 283 - -
Psa1g3528 478 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Psa1g3528 478 MobiDBLite consensus disorder prediction 56 80 - -
Psa1g3528 478 CDD WD40 160 455 - -
Psa1g3528 478 Pfam WD domain, G-beta repeat 243 280 IPR001680 GO:0005515
Psa1g3528 478 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Psa1g3528 478 Pfam WD domain, G-beta repeat 204 238 IPR001680 GO:0005515
Psa1g3528 478 Pfam WD domain, G-beta repeat 159 196 IPR001680 GO:0005515
Psa1g3528 478 Pfam WD domain, G-beta repeat 426 455 IPR001680 GO:0005515
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 243 - -
Psa1g3528 478 SMART WD40_4 367 405 IPR001680 GO:0005515
Psa1g3528 478 SMART WD40_4 325 363 IPR001680 GO:0005515
Psa1g3528 478 SMART WD40_4 199 238 IPR001680 GO:0005515
Psa1g3528 478 SMART WD40_4 283 322 IPR001680 GO:0005515
Psa1g3528 478 SMART WD40_4 157 196 IPR001680 GO:0005515
Psa1g3528 478 SMART WD40_4 417 455 IPR001680 GO:0005515
Psa1g3528 478 SMART WD40_4 241 280 IPR001680 GO:0005515
Psa1g3528 478 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Psa1g3528 478 SUPERFAMILY WD40 repeat-like 153 455 IPR036322 GO:0005515
Psa1g3528 478 MobiDBLite consensus disorder prediction 57 80 - -
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515
Psa1g3528 478 PANTHER BNAA01G27690D PROTEIN 5 478 - -
Psa1g3528 478 Gene3D - 143 478 IPR015943 GO:0005515
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 200 - -
Psa1g3528 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 324 - -
Psa1g3528 478 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 5 478 IPR045241 GO:0000398
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3528 245 454 Miscellaneous Gene Families AT5G08390 30.093 2.81e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3528 K12862 - gmx:100782357 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3528 1 304000426 304010701 Psa1g3528 1 304000426 304010701 ECH