Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3527 ATGATAGACCTCAAGTACATATGGGTACTCATTTCAATCAACAGATACATTCTCAACACAATCCAAGATGAAAAAACTAGAAAATCTCTAAAATCAAAATGCATCACAAACATAAAAATTCAAAACCAACAATTCTTCGAATTCTCTCACCAATCAGTTCTATCCAATCTCTACTACGGCATTGACGCCATTGAAACTGCAATTCAATCACACCATTCGGAAGAAAGATCTTTTAACCTAAAAACTTCAGAGCAAATGCTTCAAGTTCCGGCAATGCTTGACGAAGACGATTTCACAGCTTCAATTCCGAATCGTTACTTGGTTTGTTGCTCTTACTTTTATCTCTCGGTCGTTAGGAAGCTTCAGGGGGATGAATGGCAAGCTGCGGTGCATTTTCTTCAAGCGGTTTTGGTGTCGCCGAGGGTTGTTTGGAATGAATTTGCGCCAGAGCTTTGTGAAAGTCTTTTTAAGAAGTGTGAGAATAGAAGTTTGGAGTTTGTTGCTTGTTTGGATTCTGAGGAAGAGATTCATGAAGTCGTTGTTAAGGAGAAGGCGAGGAGATATAAAGAGTGTTTGGTGTATTATCAGGTTATGCTTTATGGAGAAATTCCATGGTGGAGCAGTTATTGCAGCAGTAATTCTGCAAATTATAGGGATGTATCAAATACCAGCTGTGTATCTTCTACTTCAGTTCATCATGAACCAAGATTGAAAACTTGCAATACATATGAGAAGATTCACCCGATGGATCCTCAAGATAGGATACAAGAAAAGTTGGATACGACAAACATAATTAAGCTTGATTCTAGCATGTTCACCAGGTCCATTGAAGATGTTGCTTTATCAATCTCGAAACGGATAGAAAAAACAAGTATCGATTTAAACTGCCGCGTTGAGGATTTATTAATAGAAGAAGCATTGCAGCCACTAGAGTTCCATCTATTTGATCATGCTAGCAGCAGACTCAGGCTCGGCCTGAAAAATCACGAAGAAAGTTCGAATATGAAATTGCAAACATCATTAGGAAAATACGGTGAAGAGTATATTGTAAACACTGCATCAATTTTCGAGAGTTTGATTGGTTCGTCAGGAACTAATTATGGTTCATTAAAGGATGTGATTTTGGATGAATTGCTAATAGTAATCTCAACTTCCAAAGAGGAAAAGGAACTAAGAGCATCGGTATCAATTCTAACAACAATAGTTTCAAGGAACAAGTCAATTATAGAAGATGTGAAAAAGAAAGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTTATGAAGCAGCAATACTAATCTATTTGATAAATCCATCTCCTATAGATATAAAAACACTGGAACTTCTTCCAATATTTGTAGAGATTGTATGCACTTCATCAAAAAGTTGTTACAAGCGTAATAAGCAAGAAGAATCGCTTCTTATGACACCTCATGCAGCATCGCTGATGATCATTGAAGAACTTGTAACTTCATTTGACTATGCTACAAATAACATGCATTTGGAAGCAATTAGTTCACCTCATTTTCTCAGTGGACTTCTAGAAGTTGCTAGAAATGACAATCTTGAAGAGTTTTTCTCTTTGACTACCATTCTTATAAAATGCATGCAGTTTGATTCACAGTGTAGAAAGTATGTGTCAAAGTTTACTCCACTTGCTCCTTTTCTACACCTTCTAGATGCAGAAAATATTCGCGCCAAATGCATGGCACTTGAGTATTTTCATGAAATCCTATGCATACCAAGATCGTCGGCTATTAATCTGCTTCAGCGGATAAAGAAAGAAAGCAGAATGGATATTATGCAGATACTGATGCATTGTACACTCCAATTACAACCCGACCACCAGATTTTAGCTGCTAACGTATTGATTCAGTTAGACACATTGAACCCAACTGATAAAAGCTTGTTCAGAGAAGAAGCTGTGGAGATTCTTCTAAGGGCATTGACATCTGAAGAAAGCTCAGAACAGATATTATCTGCATCCATTCTATCAAATCTTGCTGGTACATATACGTGGACGGGAGAATCATATACAGCTGCATGGTTTCTAAGAAAAACAGGCTTGAATTCTCCCTATCACCAAAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTACAAGATACAAGCATAGATGTTTGGTGCAGCAAAATCGCCAAATGTATCATAAGTGTTGGAGATTCCATCTTCTATGCTTTAGATAAGGGACTAAGAAGCAAAATGAAAAAAGTTTCTAGAGATTGCCTTGTAACTATTTCATGGCTTGGATGTCAAATATCAAAAAATCCAGACAGCCTCAGTAATTCTACATCTGAGATTATACTAAGAGGAGTTGAGCAATTTCTGCATCCTGGGATGGAATTGGATGAAAGACTTTTGGCATGTATGTGCATGTTTAATTATGCCTCTGGGAAAGGAAAGCAAAAACTAATGCATTTCTCGGAAGGAGTAAAAGAGTCATTGAGAAGGCTTTCAATCATAACTTGGATGGCTGAGGAATTACATAGGGTAGCTGATTTCTTGCTTCCAAACACATCACGTATTTCTTGTGTTCACACACAAATCCTTGAGGTCGGTCGCAACTTTAGCATATCAGTTTGCTCCCTCATATACTACAAGGGACTGCTATTCAGTGGATATTCAGATGGATCAATTAAGGTATGGGATATTAGGGGGCATTCAGCTAGTCTTGTATGGGATATTAAAGAACACAAGAAGTCTGTGACATGCTTTTCAATTTATGAACCATTAGACAGTCTTTTAAGTGGATCCACTGATAAAACCATAAGGGTGTGGAAAATGATCCAAAGAAATCTTGAATGTCTAGAAGTAATAGTCATGAAGGAACCAATTCATCATTTACGCGCACACGGCGAAACAATTTTCTCAATTACTGAAAGACAAGGAATAAAGGTTGTTAACAAATCAAGAGAGATAAGAGATATTTTCAAAGGTAAGCATGGGAAGTGCATGATAGTGGCTCAGGGAAAGTTATATACTGGCTGCACAGATTCAAGCATACAGGAGTATAACACAACACACAACAGGGAACTAGAAATCAAACCACCAACAAGAAGTTGGAGAAAGCAAAGTAAGCCGATCAATTCAATTGTCGCATATAGAGATTGGCTCTATAGTGCAAGTAAGCATGTTGAAGGAACAACATTCAAGGAATGGAAAAGAAGTGGGAAACCCAAGATTTCAATCCTTACTGACAAAGGAGATAATGTGGTAGCCATGGAAGTAGTAGAAGACTTCTTATACCTAATCTCTAGCTCATCAACAAGCAGCATTCAGATATGGTTGAGAGGAGTACCGAAAAAGTTAGGGAGAATATCAGCAGGGAGCAAAATAACAAGCATCTATGCTGCAAATGACATTATTTTTTGTGGTACTGAGAAGGGACTAATCAAGGGATGGATTCCTCTGTAG 3450 0.3751 MIDLKYIWVLISINRYILNTIQDEKTRKSLKSKCITNIKIQNQQFFEFSHQSVLSNLYYGIDAIETAIQSHHSEERSFNLKTSEQMLQVPAMLDEDDFTASIPNRYLVCCSYFYLSVVRKLQGDEWQAAVHFLQAVLVSPRVVWNEFAPELCESLFKKCENRSLEFVACLDSEEEIHEVVVKEKARRYKECLVYYQVMLYGEIPWWSSYCSSNSANYRDVSNTSCVSSTSVHHEPRLKTCNTYEKIHPMDPQDRIQEKLDTTNIIKLDSSMFTRSIEDVALSISKRIEKTSIDLNCRVEDLLIEEALQPLEFHLFDHASSRLRLGLKNHEESSNMKLQTSLGKYGEEYIVNTASIFESLIGSSGTNYGSLKDVILDELLIVISTSKEEKELRASVSILTTIVSRNKSIIEDVKKKGLRLCDLASALKQNVYEAAILIYLINPSPIDIKTLELLPIFVEIVCTSSKSCYKRNKQEESLLMTPHAASLMIIEELVTSFDYATNNMHLEAISSPHFLSGLLEVARNDNLEEFFSLTTILIKCMQFDSQCRKYVSKFTPLAPFLHLLDAENIRAKCMALEYFHEILCIPRSSAINLLQRIKKESRMDIMQILMHCTLQLQPDHQILAANVLIQLDTLNPTDKSLFREEAVEILLRALTSEESSEQILSASILSNLAGTYTWTGESYTAAWFLRKTGLNSPYHQNMIRNFNWLDQSLQDTSIDVWCSKIAKCIISVGDSIFYALDKGLRSKMKKVSRDCLVTISWLGCQISKNPDSLSNSTSEIILRGVEQFLHPGMELDERLLACMCMFNYASGKGKQKLMHFSEGVKESLRRLSIITWMAEELHRVADFLLPNTSRISCVHTQILEVGRNFSISVCSLIYYKGLLFSGYSDGSIKVWDIRGHSASLVWDIKEHKKSVTCFSIYEPLDSLLSGSTDKTIRVWKMIQRNLECLEVIVMKEPIHHLRAHGETIFSITERQGIKVVNKSREIRDIFKGKHGKCMIVAQGKLYTGCTDSSIQEYNTTHNRELEIKPPTRSWRKQSKPINSIVAYRDWLYSASKHVEGTTFKEWKRSGKPKISILTDKGDNVVAMEVVEDFLYLISSSSTSSIQIWLRGVPKKLGRISAGSKITSIYAANDIIFCGTEKGLIKGWIPL* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3527 1149 SUPERFAMILY ARM repeat 556 827 IPR016024 -
Psa1g3527 1149 SMART WD40_4 1069 1108 IPR001680 GO:0005515
Psa1g3527 1149 SMART WD40_4 855 895 IPR001680 GO:0005515
Psa1g3527 1149 SMART WD40_4 982 1017 IPR001680 GO:0005515
Psa1g3527 1149 SMART WD40_4 900 939 IPR001680 GO:0005515
Psa1g3527 1149 Pfam WD domain, G-beta repeat 905 939 IPR001680 GO:0005515
Psa1g3527 1149 PANTHER OS04G0584500 PROTEIN 334 1149 - -
Psa1g3527 1149 PANTHER OS04G0584500 PROTEIN 7 249 - -
Psa1g3527 1149 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 907 940 - -
Psa1g3527 1149 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 334 1149 - -
Psa1g3527 1149 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 249 - -
Psa1g3527 1149 ProSitePatterns Trp-Asp (WD) repeats signature. 882 896 IPR019775 -
Psa1g3527 1149 SUPERFAMILY WD40 repeat-like 866 1145 IPR036322 GO:0005515
Psa1g3527 1149 Gene3D - 375 832 IPR011989 -
Psa1g3527 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 904 IPR001680 GO:0005515
Psa1g3527 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 907 940 IPR001680 GO:0005515
Psa1g3527 1149 Gene3D - 834 1148 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3527 - - mtr:MTR_2g436530 2019.2