Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3488 ATGGCAATGAAGGAGGAGACGAGTCAGTGGAAGCAGGCCATGATTAATTCCACAGCTGGAGCCATTTCTGGTGCTATTTCACGGACAGTGACGTCGCCTCTTGATGTTATTAAAATTAGATTCCAGGTTCAACTAGAGCCCACTTCCTCTTGGACTTCACTACGCAGGGATGTTTCTAAGCCCTCAAAATATACTGGCATGTTTCAAGCAACCAAAGATATTTTTAGAGACGAAGGCATACGGGGTTTTTGGAGGGGTAATGTGCCAGCTTTGCTCATGGTAATGCCATATACAGCTATACAGTTTACTGTTTTACATACATTGAAGACTTTTGCCTCTGGTTCATCCAAGACAGAGAATCACATTAATCTGAGCCCTTATCTATCCTATGTAAGTGGGGCATTAGCTGGATGTGCAGCTACTGTGGGGTCATATCCATTTGATCTTCTTCGAACTATATTAGCTTCTCAGGGTGAACCAAAGGTTTATCCAAACATGAGGTCAGCATCCATTCATATTCTTCGGACTCGTGGGTTTCGAGGCTTGTATTCCGGTTTGTCACCGACACTAGTTGAGATTATACCTTATGCAGGCCTACAATTCGGCACTTATGATACATTCAAACGTTGGGCCATGGTGTGGAATCATGCTCAATATTCAAATACTGCTGCAGAGGAGAGCCTCTCGAGCTTTCAGCTTTTCCTGTGTGGGCTAGCAGCAGGAACATGTGCCAAGCTTGTCTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGCTTGAACATCGTGCATATAAAAATATGTTTGACGGCTTGAAACAGATATTACGAATGGAGGGTTGGGCTGGTTTGTATAAGGGGATAGTTCCATCTACTGTTAAAGCTGCACCAGCCGGTGCTGTAACTTTTGTTGCTTATGAATTGACATCAGATTGGCTGGAGTCTATTTTTTTGACTTGA 999 0.4334 MAMKEETSQWKQAMINSTAGAISGAISRTVTSPLDVIKIRFQVQLEPTSSWTSLRRDVSKPSKYTGMFQATKDIFRDEGIRGFWRGNVPALLMVMPYTAIQFTVLHTLKTFASGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSASIHILRTRGFRGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMVWNHAQYSNTAAEESLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARLEHRAYKNMFDGLKQILRMEGWAGLYKGIVPSTVKAAPAGAVTFVAYELTSDWLESIFLT* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3488 332 SUPERFAMILY Mitochondrial carrier 10 320 IPR023395 -
Psa1g3488 332 Gene3D Mitochondrial carrier domain 7 328 IPR023395 -
Psa1g3488 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Psa1g3488 332 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 330 - -
Psa1g3488 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 111 IPR018108 -
Psa1g3488 332 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Psa1g3488 332 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Psa1g3488 332 PRINTS Mitochondrial carrier protein signature 86 106 IPR002067 GO:0055085
Psa1g3488 332 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Psa1g3488 332 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Psa1g3488 332 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Psa1g3488 332 Pfam Mitochondrial carrier protein 228 326 IPR018108 -
Psa1g3488 332 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Psa1g3488 332 Pfam Mitochondrial carrier protein 10 112 IPR018108 -
Psa1g3488 332 PANTHER SOLUTE CARRIER FAMILY 25 7 330 - -
Psa1g3488 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 210 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3488 Psa-Chr1 301959767 301967948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3488 5 328 Organic Solute Cotransporters AT3G21390 75.000 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3488 K15108 - gmx:100783563 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3488 1 301959767 301967948 Psa1g3488 1 301959767 301967948 ECH