Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3433 ATGCCACCACCTCGAGCGCTTCCAGGGTTCTACTTCGACGCAGAGAAGAACCGCTATTTCCCAATCAAAAACCCCATTCCCGGTTCTTCTTCCAAGAAACCTAAAATCACTACTCCAAAATCTCCCCAAACCGATCAGTTTCAAGAAAAGAGTAGGAGTTCTTGTAGGAAGCTTCGTAACAGAATTTCTAAGCTGCTTCAGATTAGGGAGTTAGATGGTCGTCATGTTAGTGCCTCACATTATTGCAAGTGTAACTTCACTGAGGAGTTTCGGAGAATACGAACATCTCAGCCTACCATATGGAAGTATCAAGGAACTGATAGAATGTGTATTAGTGCTTTAGAACACTTGAATGTTGATGTGCAGACACTAGAAGGTAGATTTCGGACTGATGTTTTGTTGAGTGGAAGCATAAGTGGCTCGCTGAGTTTTTCTGAAGTTGGTAGGATTGGGCAAAATTTTAATGACGGGGTAAAGTGGATGCCATATTGTATGAAGAGTAATATTAAAGGGAAAGAAGATGGGCATAGCAAGGTGCCAGGGCCTCTTTTCAGACATAATGGAGCTTCGCTGCATATGTCCTCCAGAATATCTTGTATAAGATTGGGTCCAAATTTAGCCCCTCATGTTGCGAGTGATAGTCCAATTGTTGGAAATGCTTTATTTACTACTTTGGGATCAGAAACATCTGGTGGATCTGTTTATACCATCAGTCTTGTTGAGCCAATAGATCTTGGAGCAGGAATTCTAAATACATGGAGTAGACTAGAGGAAATAACTTCTTTCATGTGTACCCTTTGGACAGCTGAATACGACTATAACAGACATCGGGCTATAATTGGTACTAATCAGGGTGGTGCTTCAGTGGATCTGGAAAGTGGGACAAGGTCATGGTTTTTACGTTGTAAAAGTGATGTTTTTGCACAACAAATTGTTGATTCAGGAAATGTGGTTTTATGTGGACTAAGAAACGGGGAAGTTGTCTCCGTAGATTTTAGAAAGAAAAGATTGCTTTCTAGTAGATTTCCTGAGCATAGGATATCATATGTATCTTCAGATAAGAGAGTTGGAAGTTCTAATCAAGGAGGGTTCAAGCTTGCCGGGAACATATATCCTTCACATACCATTAAGATGCCTTCATCTATATCCTGTTTGGCGTCACTTAAATATGACGACCAGTACTTCTTGGCAAGCTCTGTGGATGGATCGATAAAGCTATATGACCGTCGAATGCTCCAAAGGGGCGCTGTTCAATCATATGAAGGGCACGTGAATTCCCACACTCAAATACAGCTCGGTGTTGACCCAGATGAGAGATATGTTATGTCAGGTGGGGAGGATTGCAAGCTACGCATATGGAGTATAAAATCCGGGGAATTGCTTTTGGAGGATAAATTTTCTAATTCAGTTCTCACCACTGTGTGCTATCAATCATTTAAAAAATTTAAAGCAGAGGAAGAAAACCAGTACACATACAATTCTTCTTTGGGTGCATGGCTTGGATCGTATGAAGGGCTATTTTATATGGACTGGCAGTGA 1539 0.4113 MPPPRALPGFYFDAEKNRYFPIKNPIPGSSSKKPKITTPKSPQTDQFQEKSRSSCRKLRNRISKLLQIRELDGRHVSASHYCKCNFTEEFRRIRTSQPTIWKYQGTDRMCISALEHLNVDVQTLEGRFRTDVLLSGSISGSLSFSEVGRIGQNFNDGVKWMPYCMKSNIKGKEDGHSKVPGPLFRHNGASLHMSSRISCIRLGPNLAPHVASDSPIVGNALFTTLGSETSGGSVYTISLVEPIDLGAGILNTWSRLEEITSFMCTLWTAEYDYNRHRAIIGTNQGGASVDLESGTRSWFLRCKSDVFAQQIVDSGNVVLCGLRNGEVVSVDFRKKRLLSSRFPEHRISYVSSDKRVGSSNQGGFKLAGNIYPSHTIKMPSSISCLASLKYDDQYFLASSVDGSIKLYDRRMLQRGAVQSYEGHVNSHTQIQLGVDPDERYVMSGGEDCKLRIWSIKSGELLLEDKFSNSVLTTVCYQSFKKFKAEEENQYTYNSSLGAWLGSYEGLFYMDWQ* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3433 512 Pfam WD domain, G-beta repeat 380 408 IPR001680 GO:0005515
Psa1g3433 512 Pfam WD domain, G-beta repeat 417 454 IPR001680 GO:0005515
Psa1g3433 512 SMART WD40_4 413 454 IPR001680 GO:0005515
Psa1g3433 512 SMART WD40_4 369 408 IPR001680 GO:0005515
Psa1g3433 512 MobiDBLite consensus disorder prediction 23 53 - -
Psa1g3433 512 SUPERFAMILY WD40 repeat-like 251 476 IPR036322 GO:0005515
Psa1g3433 512 MobiDBLite consensus disorder prediction 30 49 - -
Psa1g3433 512 Gene3D - 259 497 IPR015943 GO:0005515
Psa1g3433 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 463 IPR001680 GO:0005515
Psa1g3433 512 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 510 - -
Psa1g3433 512 PANTHER KATANIN P80 SUBUNIT 12 510 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3433 393 465 Miscellaneous Gene Families AT5G08390 32.877 4.60e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3433 K11799 - gmx:100798753 692.189