Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3427 ATGAAACCCTCCACGCTTCATCTTTTTGTCTTGTTCTTTCTTCTAAGCTATGTTCAAGGTCGTTTTGTAGTGGAGAAAAACAGCATAACTGTTCTGTCACCACATAAATTACGAGGTAAAAAAGATGGTGCCATAGGAAACTTTGGAATTCCAAATTATGGAGGCTATATTCTTGGATCACTTGTTTATCCTGATAAAGGCTCTCATGGTTGTCAAGTCTTTGATGGTGATAAGCCCTTCAAGTTTCGGTCTAATCGTCCAACTATTGTTCTTCTTGATCGCGGAGAGTGTTATTTTGCCTTAAAGGTATGGCATGCACAGCTGGCTGGAGCTGCAGCAGTGTTAGTTACTGACAGTATTGATGAGACACTGATAACTATGGATTCGCCTGAGGAGAGTACCGATGCCGACGGATACATAGAAAAGATTGTAATTCCGTCGGTTCTAGTTGAAAAATCCTTTGGCGATTCATTGAAGGATTCTCTAAGTAACAAAGACGAAGTTTTGCTGAGAATAGACTGGAGGGAATCTGTACCTCACCCTGACGATCGGGTCGAGTATGAGTTCTGGACCAACAGCAATGACGAATGTGGTCCTCGTTGTGATGAACAGATGGATTTTGTGAAGAATTTTAAGGGTCATGCTCAGATTCTTGAGAGAGGTGGGTATACATTGTTCACTCCGCATTATATAACATGGTTTTGTCCAAAGCCGTTTGTTGAAAGCAGCCAGTGCAAGTCTCAATGTATAAACCACGGACGATATTGTGCGCCGGATCCTGAGAAGGATTTTGGTGAGGGATATGAAGGGAAGGATGTAGTGTATGAGAATTTGAGGCAGCTTTGTGTTCATAGAGTAGCGAACGAGAGTAACCGTTCGTGGGTGTGGTGGGATTATGTGACAGATTTTCATGTTAGGTGTTCTATGAAGGAGAAAAAATACAGCAAAGATTGTGCTGAAGTTGTCATGAAATCATTAGATCTTCCTATTGAGAAAATTAAGAAATGTGTTGGTGACCCTGAAGCTGATGTAGAGAATGAAGTCCTAAAGATTGAACAAACAGCACAGATTGGTGGAGGATCTCGTGGCGATGTAACCATCTTGCCAACATTGATTTTAAACAATGTCCAATATAGAGGAAAATTGGAGAGAACATCAGTTTTGAAGGCAATATGTGCAGGATTTAAGGAAACTACAGAACCTCAAGTTTGTTTAAGCGGAGATATTGAAACTAACGAGTGTCTGCAAAGAAGAAATGGAGGATGCTGGCAAGACAGAAGTGCCAATGTAACTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGCGAGTGTCCTGTTGTGGAAGGTGTTCAGTATAAGGGTGATGGTTATACCACATGTGAAGCTTTTGGACCTGCAAGATGTTCTTTAAACAATGGAGGTTGTTGGTCAGAGACTAGAAATAAAATTACTTTCTCTGCTTGTTCAGAATCCAAGGTAAATGGCTGTCACTGCCCGGTTGGATTTGTTGGAGATGGTATTAAGTGTAAAGATGTTGATGAATGTAAGGAAAAAAGTGCTTGTCAGTGTGATGGCTGCAGCTGCAAGGACACTTGGGGAGGTTATGATTGTAAATGCAAAGGAGATCTTCTTTATATCAAGGAACAAGATATTTGTATTGAAAGAAATGGATCTAAATTTGGAAAGATACTCGCGTTTGTGGTCATAGCAGTTGTTGCGATAGCTGGTCTAGCTGGTTACGTATTCTACAAATATAGACTCAGGTCTTACATGGACTCGGAGATCATGGCTATCATGTCACAATACATGCCACTCGACCAGCAAAGCAATGTAGTTCATGCGGAATCAGAGCCTTTACGACAAGGCAATGTATAA 1875 0.4112 MKPSTLHLFVLFFLLSYVQGRFVVEKNSITVLSPHKLRGKKDGAIGNFGIPNYGGYILGSLVYPDKGSHGCQVFDGDKPFKFRSNRPTIVLLDRGECYFALKVWHAQLAGAAAVLVTDSIDETLITMDSPEESTDADGYIEKIVIPSVLVEKSFGDSLKDSLSNKDEVLLRIDWRESVPHPDDRVEYEFWTNSNDECGPRCDEQMDFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESSQCKSQCINHGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRCSMKEKKYSKDCAEVVMKSLDLPIEKIKKCVGDPEADVENEVLKIEQTAQIGGGSRGDVTILPTLILNNVQYRGKLERTSVLKAICAGFKETTEPQVCLSGDIETNECLQRRNGGCWQDRSANVTACKDTFRGRVCECPVVEGVQYKGDGYTTCEAFGPARCSLNNGGCWSETRNKITFSACSESKVNGCHCPVGFVGDGIKCKDVDECKEKSACQCDGCSCKDTWGGYDCKCKGDLLYIKEQDICIERNGSKFGKILAFVVIAVVAIAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQSNVVHAESEPLRQGNV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3427 624 Pfam PA domain 59 158 IPR003137 -
Psa1g3427 624 ProSitePatterns Calcium-binding EGF-like domain signature. 511 537 IPR018097 GO:0005509
Psa1g3427 624 SMART egfca_6 511 553 IPR001881 GO:0005509
Psa1g3427 624 CDD EGF_CA 511 540 - -
Psa1g3427 624 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 601 - -
Psa1g3427 624 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 7 601 - -
Psa1g3427 624 Gene3D - 19 181 - -
Psa1g3427 624 Gene3D Plasmodium vivax P25 domain 387 560 - -
Psa1g3427 624 SUPERFAMILY PA domain 88 168 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3427 Psa-Chr1 298578637 298583324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3427 2 621 Miscellaneous Gene Families AT1G30900 69.565 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3427 - - pvu:PHAVU_009G243800g 1134.01