Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3407 ATGACAAGAAAATCTCTTGTTTGTTCTTTGGTTCTTGTGATTGTTTCTTTCGTTATAGTTCATGTTTACGGTGAGAATTTTCATGTTAGGAAAATTTCTGATGGAAACTATCATGAAACGTTACGTAGATTGCAATCTTTGAAAGCCTCTTTAACAAGACATGATTCCATTGCTTCAACTCCTTCTTTCTCTCCTTCTCCTTCTTCTCTGCCAAGTGAGGGTATGAGCAATCCAAGAGTATACCATGTGACATCTTATGGTGCAGACCCAACAGGAAGTTCAGATAGTACTGAAGCTATCCTTGCAGCCATAGCAGATGCAGCCAATGGTCCAAATGAAGGATATTTGATGGAAGGCATCAACAACCTTGGAGGTGCACAGATTAATCTTGAAGGTGGAAATTACTTGATCCGTAGGTCACTCACACTTCCGGTATCCGGCGTTGGAAACCTCATGATACATGGAGGAACAATAACAGTCTCAGATGATTTTCCAAAAGATGGCTACATTATTGATTTATCATCAACTTCTTCTAATGAAAATGATGGTAAAAATTCACCTTCATCATCCTACAATTTTGAGTACATAACTCTCAAGGATCTTTTACTAGATTCAAACTATAGAGGAGGGGGCATTTCAGTCATAAACTCACTCAGAACAAACATAGACAACTGTTACATTACACATTTCACAACAAATGGAATTTTAGTCCAAGGTGGACATGAAACTTACATAAGAAACTCGTTCCTCGGCCAACACATAACCGCGGGAGGCGATAGAACCGAAAGGAATTTCTCAGGAACAGCGATAAATCTCCAAGGCAACGATAACGCTGTCACCGATGTTGTAATTTTCTCGGCTCAAATAGGAATCATGGTCACTGGTCAAGCCAACATATTCTCTGGTGTACATTGTTACAATAAGGCCACTGGATTCGGCGGGACAGGAATTTACTTGAAACTACCTGGTTTAACACAAACAAGGATTGTGAATTCTTACATGGATTACACTAGTATTGTCGCTGAAGATCCTGTTCAACTTCATATTTCGAGTAGCTTCTTCCTCGGTGATGCTAATATTGTGTTGAAATCTATGACTGGTGTTTTAAGCGGTGTTACTATTGTTGATAACATGTTCTCTGGATCAGATCAAGGGGTTGAAATTGTTCATTTGGATAAATCTAATAGTCCTTTTCATCAAATTGATCAAGTTATTGTTGATAGGAACGTTGCGAGAGGAATGAGTCTAAAGGCGACGGTTGCGAAAATGTCTATGCAAGGGAATGGAACTTTATGGAATGTTGATTTTAACAGCATTCTTCTTTTTCCTAACCTTATTAAAAATGTTCAGTACTCTTTAAGTTCAACAGGGAGCAGTTTTCCTAGTCATGCGATTAGGAATGTGTCGGATAATCGGGTTGTGATCGAAACGAATGAAGTGGTTACTGCGAATGTTTTCGTCGCGGTGGATCAGAGTATGGTAAATTGA 1488 0.3898 MTRKSLVCSLVLVIVSFVIVHVYGENFHVRKISDGNYHETLRRLQSLKASLTRHDSIASTPSFSPSPSSLPSEGMSNPRVYHVTSYGADPTGSSDSTEAILAAIADAANGPNEGYLMEGINNLGGAQINLEGGNYLIRRSLTLPVSGVGNLMIHGGTITVSDDFPKDGYIIDLSSTSSNENDGKNSPSSSYNFEYITLKDLLLDSNYRGGGISVINSLRTNIDNCYITHFTTNGILVQGGHETYIRNSFLGQHITAGGDRTERNFSGTAINLQGNDNAVTDVVIFSAQIGIMVTGQANIFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMTGVLSGVTIVDNMFSGSDQGVEIVHLDKSNSPFHQIDQVIVDRNVARGMSLKATVAKMSMQGNGTLWNVDFNSILLFPNLIKNVQYSLSSTGSSFPSHAIRNVSDNRVVIETNEVVTANVFVAVDQSMVN* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3407 495 PANTHER POLYGALACTURONASE QRT3 1 493 IPR039279 GO:0004650
Psa1g3407 495 Pfam Pectate lyase superfamily protein 83 311 IPR024535 -
Psa1g3407 495 Gene3D - 80 495 IPR012334 -
Psa1g3407 495 SUPERFAMILY Pectin lyase-like 79 469 IPR011050 -
Psa1g3407 495 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 493 - -
Psa1g3407 495 SMART pbh1 217 239 IPR006626 -
Psa1g3407 495 SMART pbh1 148 173 IPR006626 -
Psa1g3407 495 SMART pbh1 369 390 IPR006626 -
Psa1g3407 495 SMART pbh1 274 295 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3407 Psa-Chr1 297885197 297888938 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3407 - - gmx:100804107 751.51