LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g3406	ATGGCTTCAAACACCATGGCTGGTTTGATCACTGGCTCGACTTCTCATTTCTCACATGACTCTGATGAGCATAAGCCTCCTACTGCTAAATCTTCGTCGAAAATATGTCGTGTTTGTGGTGATGAGATTGGATATAAGGAAACTGGAGAGCTTTTTGTTGCTTGTCATGTTTGTGGATTTCCTGTTTGTAAACCTTGTTATGAGTATGAGAGGAGTGAAGGGAATCAATGTTGTCCTCAATGCAACACTCGCTATAAGCGCCATAAAGGTTGTTCGAGAGTGGTTGGAGATGAAGATGAGAACCTTGATGGAGATGATTTTGAAGATGAGTTTCCAATCAAGAAGCCTCACAATGATCTAGACCAGAACCGCGGTGTCAATCATGTGGAAAATTTGGACTACAATCAACCGAAATTGAATCCTAATGGTCAGGCTTTTTCTTATGCTGGAAGTGTTGCTGGCAAGGATTTTGAAGGGGAGAAGGAATCCCTCAGCAATGCAGAATGGCAAGAGAGAGTAGAAAAATGGAAAGTAAGGCAAGAAAAGAGAGGTCTACTAAACAAAGAGGATGGCAAAGAAGACCAAGTTGAAGAAGATGAGTATCTTATGACTGAAGCAAGACAACCATTATGGCGCAAAGTTCCAATAGCATCAAGCTTAATCAATCCATACCGTATCGTAATTGTGATGAGACTAGTAATTCTAGCATTCTTCTTCCGTTTCCGAATCTTAACACCGGCATACGATGCATATCCTTTATGGCTCATATCAGTCATATGTGAAATATGGTTTGCACTTTCGTGGATACTTGATCAGTTTCCGAAATGGTTACCAATCACGCGCGAAACTTACTTAGACCGTTTATCTATAAGATTCGAACGTGAAGGTGAACCGAACCAACTTTCGCCTGTCGATGTTTTTGTTAGTTCTGTTGATCCTTTGAAAGAACCGCCTATTATAACAGCAAACACTGTTCTGTCAATTCTTTCTGTTGACTACCCTGTTGAGAAAGTCACAGCTTATGTCTCAGATGATGGTGCTTCTATGCTTTTATTCGATTGTTTGGCCGAAACTTCCGAGTTTGCTAGAAGGTGGGTTCCTTTTTGTAAAAAGTATAGTATTGAACCAAGGGCGCCAGAGTACTATTTTTCGGAGAAAATTGATTACTTGAAGGATAAGGTTCAGCCTACTTTTGTCAAGGAAAGAAGGTCTATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAATGCTTTAGTGGCAAAGGCTTTGAAGAAACCAGAAGAGGGTTGGGTTATGCAGGATGGAACTCCATGGCCTGGGAACAACACCCGCGATCATCCAGGAATGATTCAGGTTTACTTGGGAAGTGGTGGTGCACTAGACGTGGAAGGCAAGGAACTGCCGAAACTCGTGTATATTTCGCGTGAAAAACGTCCCGGTTATCCACATCATAAGAAAGCCGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTTGATTGTGATCACTACATCAACAATAGCAAGGCTCTTAGAGAAGCCATGTGCTTCCTAATGGATCCTCAGCTAGGGAAGAAACTCTGCTATGTCCAATTTCCTCAAAGATTCGACGGTATTGATCGACACGATCGATATGCTAATCGCAACACTGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGAATCCAAGGTCCAGTTTACGTCGGTACGGGAACCGTGTTCAACAGACAAGCATTGTATGGATATGAACCACCAGTTTCTGAGAAAAGGCCAAAAATGACATGTGATTGTTGGCCTAAATGGTGTTGCTTTTGTTGCGGTGCAAGGAAAACCAAATCGAAAAAGAAGTCCGGAACAAATGGAAGAGGTCTCTTCAGTAGAATGTACAAGAAGAAGAAAATGGGGGGAAAAGATTATGTTAGAAAAGATTCTAGTTCCATGTTTGATCTTGAAGAGATTGAAGAAGGACTTGAAGGGTATGAGGAGCTAGAGAAATCATCACTCATGTCACAGAAAAGTTTCGAGAAGCGATTTGGACAGTCCCCGGTTTTCATTGCTTCAACTTTGATGGAAAATGGAGGACTTCCTGAAGGCACAAACACACAATCATTGGTTAAGGAAGCCATTCATAACATAAGCTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGATGGATTTATGGCTCCGTCACAGAAGATATATTGACTGGATTTAAGATGCATTGTCGAGGATGGAAATCGGTATATTGTATGCCAAAGAGACCTGCTTTCAAGGGATCTGCACCAATCAATCTGTCAGATAGGTTGCATCAAGTTCTGCGATGGGCTCTAGGTTCTGTCGAGATCTTCATGAGTCGCCATTGTCCACTTTGGTATGGTTACGGAGGAAAATTGAAGTATCTAGAGAGGCTCGCGTATACGAACACCATTGTTTATCCTTTCACTTCAATCCCTTTGATTGCATACTGCACAATTCCAGCCGTGTGCCTCCTCACCGGAAAGTTCATCATTCTTAGAGAGGCTCGCGTATACGAACACCATTGTTTATCCTTTCACTTCAATCCCTTTGATTGCATACTGCACAATTCCAGCCGTGTGCCTCCTCACCGGAAACTGACCAACCTTGCTAGTGTTTGGTTCATGGCATTGTTTATCTCCATCATTTTAACGGGAGTACTCGAGCTTCGATGGAGTGGAGTTACCATCGAAGACTGGTGGAGAAACGAGCAATTCTGGGTGATTGGAGGTGTATCAGCGCATCTTTTCGCTGTGTTTCAAGGTCTGCTCAAGGTTCTTGCAGGAGTAGACACAAACTTTACTGTCACGGCAAAAGCAGCAGATGATGCTGAATTCGGAGAGTTATATCTCTTCAAATGGACTACACTTCTCATTCCACCAACCACTCTTATAATCTTGAACATTGTCGGAGTTGTGGCCGGTGTCTCTGATGCAATTAACAATGGTTATGGTTCTTGGGGACCTTTATTTGGGAAACTGTTCTTTGCATTTTGGGTCATTGTTCATTTATATCCTTTCCTTAAAGGTCTCATGGGAAAACAAAACAGGACTCCTACAATTGTGGTGCTTTGGTCAATCCTTTTGGCATCAATTTTCTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCTAAGCAAAATGGTCCTATACTCAAACAATGTGGTGTAGAATGCTGA	3240	0.4194	MASNTMAGLITGSTSHFSHDSDEHKPPTAKSSSKICRVCGDEIGYKETGELFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCSRVVGDEDENLDGDDFEDEFPIKKPHNDLDQNRGVNHVENLDYNQPKLNPNGQAFSYAGSVAGKDFEGEKESLSNAEWQERVEKWKVRQEKRGLLNKEDGKEDQVEEDEYLMTEARQPLWRKVPIASSLINPYRIVIVMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVFVSSVDPLKEPPIITANTVLSILSVDYPVEKVTAYVSDDGASMLLFDCLAETSEFARRWVPFCKKYSIEPRAPEYYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSGGALDVEGKELPKLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYEPPVSEKRPKMTCDCWPKWCCFCCGARKTKSKKKSGTNGRGLFSRMYKKKKMGGKDYVRKDSSSMFDLEEIEEGLEGYEELEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLIAYCTIPAVCLLTGKFIILREARVYEHHCLSFHFNPFDCILHNSSRVPPHRKLTNLASVWFMALFISIILTGVLELRWSGVTIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQNGPILKQCGVEC*	1080

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g3406	1079	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	161	858	-	-
	Psa1g3406	1079	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	23	120	-	-
	Psa1g3406	1079	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	886	1079	-	-
	Psa1g3406	1079	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	18	109	IPR013083	-
	Psa1g3406	1079	PANTHER	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED	161	858	-	-
	Psa1g3406	1079	PANTHER	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED	23	120	-	-
	Psa1g3406	1079	PANTHER	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED	886	1079	-	-
	Psa1g3406	1079	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	318	841	IPR029044	-
	Psa1g3406	1079	Coils	Coil	402	422	-	-
	Psa1g3406	1079	Pfam	Zinc-binding RING-finger	27	101	IPR027934	-
	Psa1g3406	1079	Pfam	Cellulose synthase	304	854	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Psa1g3406	1079	Pfam	Cellulose synthase	885	1072	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Psa1g3406	1079	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	415	596	IPR029044	-
	Psa1g3406	1079	SUPERFAMILY	RING/U-box	20	103	-	-
	Psa1g3406	1079	CDD	mRING-HC-C4C4_CesA_plant	34	84	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g3406	Psa-Chr1	297867371	297872275	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g3406	27	1079	Glycosyltransferase	AT5G05170	62.602	0.0	1399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g3406	K10999		-	gmx:100781996	1904.41