Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3404 ATGAACGATCACCAGGAGTGTGAAGTTCGCCAAAACGATAAACCTGTTCGAGTTTATGCCGATGGAATTTACGATCTCTTTCACTTCGGTCATGCACGTTCTCTTGAACAAGCCAAGAAATCGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGACCACTCATAAGTACAAGGGTAAAACTGTTATGACTGAGGCCGAACGCTATGAGTCTCTTCGCCACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCATGGGTAATCAATCAGGAGTTCATTGACAAGCATCAAATTGACTATGTGGCTCATGATTCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACACAGCGAACGGAAGGAATTTCTACTTCTGATATCATAATGAGAATCATCAAAGATTATAACCAGTATGTAATGCGTAATTTGGATCGTGGTTATTCAAGAAAAGACCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTGAAGAAACAGCAAGAGACTGTGGGAAAGAAGATAGGAACAGTGAAAAAAATTGCTGGCATGAACCGTACTGAGTGGGTCGAAAATGCTGATCGATTAGTTGCTGGATTCCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACGGCGATCAGAGACAGAATTCAAGAACAACTGAAGGCACAGCAGCTAAGATCTCTTCTATACGACGAGTGGGATGATGACGTTGACGATGAATTCTATGAAAATGAATCTGTGGAATACTACAGCGACTAA 858 0.4103 MNDHQECEVRQNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKYKGKTVMTEAERYESLRHCKWVDEVIPDVPWVINQEFIDKHQIDYVAHDSLPYADTSGAGKDVYEFVKAIGKFKETQRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKIGTVKKIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLRSLLYDEWDDDVDDEFYENESVEYYSD* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3404 285 CDD CCT 14 165 IPR041723 -
Psa1g3404 285 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 17 84 IPR004821 GO:0003824|GO:0009058
Psa1g3404 285 Gene3D HUPs 2 236 IPR014729 -
Psa1g3404 285 Pfam Cytidylyltransferase-like 19 148 IPR004821 GO:0003824|GO:0009058
Psa1g3404 285 PANTHER CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE 2-LIKE ISOFORM X1 5 283 - -
Psa1g3404 285 PANTHER CYTIDYLYLTRANSFERASE 5 283 IPR045049 GO:0004105|GO:0006657
Psa1g3404 285 SUPERFAMILY Nucleotidylyl transferase 17 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3404 Psa-Chr1 297807913 297811523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3404 42 276 Acyl Lipid Metabolism Gene Families AT2G32260 81.356 7.03e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3404 K00968 - gmx:100791886 484.567