Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3393 ATGGTTGCGTCATTGGCATGCCTTGTTGGGAATAGTTTATCTACACACATTAATAAAGTAAATATTCACAAGGACATAAATGAAAGACATATCTTCTTTTCTTGGAGACATTCATCGTTGAAACGAGCATCGAAAACTATATTAGTCAAGGCGTCTTTGGATCAAAGGGAACATGAAGGGAGAAGAGGATTTCTGAAATTATTGAATCTTACAGTTGGGTTACCCGCATTATTAGGAAGCGCAAAAGCTTATGCTGATGAACAAGGAGTTTCATCCTCCAAAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAAGACAGGGTTAAAAAAGTTGACCTGTATGAGAATGGAACTATAGCTATTGTAGAGGCTGTTTCTCCCGAGTTAGGTAATCGGGTGCAGCGAGTGCGAGTTCAACTTCCTGGACTTAGCCAAGAACTCCTTCAGAAATTCAGGCAAAAGAACATCGACTTTGCAGCTCATAATGCCCAAGAAGAGTCAGATTCTTTGTTTTCAAACCTGATTGGAAATTTGGCTGTCCCTATAATTGTGATTGGAGGACTGTTCCTTCTCTCGCGACGGTCATCGGGAGGGACGGGTGGTCCCGGTGGGTCTGGCTTTCCTTTTGCTTTTGGTAAATCCAAAGCCAAATTTCAAGTGGAACCAAATACCGGAGTTACATTTGATGATGTTGCTGGGGTAGATGAAGCGAAGCAGGATTTTGTGGAGGTAGTGGAGTTTCTAAAAAAGCCTGAGAGGTTCACTGCTATTGGAGCTCGCATACCAAAAGGAGTTCTTCTTGTTGGTCCCCCGGGGACTGGGAAGACTCTATTAGCTAAGGCTATTGCTGGTGAAGCAGGTGTCCCGTTTTTCTCAATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCATCTCGAGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCCTGTATTGTTTTTGTTGACGAAATTGATGCTGTGGGGAGGCAACGAGGCACTGGAATTGGTGGGGGGAATGATGAAAGGGAACAGACCCTGAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGAATCATTGTCATTGCAGCAACCAACAGGGCTGACATTCTTGATTCCGCTTTATTGAGACCGGGGCGGTTTGATAGACAGGTATCAGTTGACGTTCCAGACATTCGAGGAAGGACTGAAATACTAAAGGTTCATGGTAGTAATAAAAAGTTTGATGCCAATGTTTCTCTCGAGGTAGTTGCAATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAACTGGTCGGCGTGGAAAGACAGAAATTTCATCAAAAGAGATTGACGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGATAGACGGGAAGAGCAAGAATTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACCCCTGGTCATGATCCTGTACAAAAGGTAACCCTTGTTCCCCGTGGGCAAGCTCGGGGTCTCACTTGGTTCATTCCTTCTGATGATCCAACACTAATCTCCAAACAACAACTCTTTGCAAGAATTGTCGGTGGACTTGGCGGAAGAGCAGCAGAGGAAATTATTTTTGGTGAGCCCGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCTAAACAGATGGTAATCACATTTGGAATGTCCGACATTGGTCCTTGGTCGCTTATGGACGGCTCAGGTCAAAATGCAGATGTCATCATGAGAATGATGGCTAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTTTGCTATCAAGAGGCTCTCAGATGAAGCATATGAAATTGCATTGAAGCATATAAGGAACAACCGTGAGGCCATCGATAAAATTGTGGAAGTCCTACTTGAAAAAGAGACTATTACCGGAGACGAATTCAGAACTCTCCTTTCAGAGTTCGTTGAAATTCCACCTGAAAATGTGGTCTCTTCTTCAACTCCCTCACCAGTTTCTGTTTGA 2079 0.4319 MVASLACLVGNSLSTHINKVNIHKDINERHIFFSWRHSSLKRASKTILVKASLDQREHEGRRGFLKLLNLTVGLPALLGSAKAYADEQGVSSSKMSYSRFLEYLDKDRVKKVDLYENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFRQKNIDFAAHNAQEESDSLFSNLIGNLAVPIIVIGGLFLLSRRSSGGTGGPGGSGFPFAFGKSKAKFQVEPNTGVTFDDVAGVDEAKQDFVEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGSNKKFDANVSLEVVAMRTPGFSGADLANLLNEAAILTGRRGKTEISSKEIDDSIDRIVAGMEGTVMIDGKSKNLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVITFGMSDIGPWSLMDGSGQNADVIMRMMARNSMSEKLAEDIDFAIKRLSDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRTLLSEFVEIPPENVVSSSTPSPVSV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3393 692 PANTHER METALLOPROTEASE M41 FTSH 5 682 - -
Psa1g3393 692 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Psa1g3393 692 Gene3D - 217 399 IPR027417 -
Psa1g3393 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 469 IPR027417 -
Psa1g3393 692 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 5 682 - -
Psa1g3393 692 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 45 680 IPR005936 GO:0004176|GO:0004222|GO:0016020
Psa1g3393 692 Pfam ATPase family associated with various cellular activities (AAA) 266 397 IPR003959 GO:0005524|GO:0016887
Psa1g3393 692 CDD AAA 257 398 - -
Psa1g3393 692 SMART AAA_5 262 401 IPR003593 -
Psa1g3393 692 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 670 IPR005936 GO:0004176|GO:0004222|GO:0016020
Psa1g3393 692 Gene3D Peptidase M41 478 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa1g3393 692 Gene3D - 89 172 - -
Psa1g3393 692 SUPERFAMILY FtsH protease domain-like 480 680 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa1g3393 692 Pfam AAA+ lid domain 421 464 IPR041569 -
Psa1g3393 692 Pfam Peptidase family M41 479 668 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Psa1g3393 692 Gene3D - 400 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3393 Psa-Chr1 296959462 296963397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3393 220 670 Miscellaneous Gene Families AT5G53170 49.339 1.05e-135 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3393 K03798 - tcc:18609064 1121.3