Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3349 ATGTCACAATCATCTGATATCAAAGCAGTTGTGAGGCCTATCATTTTCCGAGAGTACATCACAGAATGTTTAGATGCTTTTCCTGCAAGCATCATCAACGAAAACATGAGCCAATTCCACTTCATTTTGGGCTTTGCCACAGATACTTATCTTCAAGATGGAACAGGCACAGGAAACTTCACCCGCACTTGGAACGTTGATGACTTTAGCCCAACAAAAGTGTTGAATCTCAAGCAAGAGCATAGGAATGTGAAAGTGGTAATAAGCATAGGAGGCCATGGCCCTGAAGATGTATTCAACCCTTATGATAAAGAGGAGTGGATTAAGAACGCCAAATCATCAATCAAAGACCTCCTCCTAGACTACAAGGTTGAATCCACACCTGTCAACATTTACACGATTGATGGTATTGATATTAACTATGAAATCATCAAATCCAATGAGGATGACTTTGCCTACTGCATAGGTAAGGTCATAAAACAACTCAAAGAGGATCCCCAAGTTTTAAACTCCGTGAATGTGGTGTCCATTGCTCCAACTGAGGATCTCCAACCCCACTACCGCACACTGTATCTCGAAAACCAAGACAATATTGATTGGATTAATTACAAGTTCTATAATCAGAGTTTTGACTCAGAGAATGAGTTTGTTAAGCTCTTTAAAATACTACTTTTTCAATATCGTACACCGTGTAAACTCTTGCCAGGAGTCAGCACCAATACATCTAGTCCTTCTCCAATGACAACTGATATCTTTGTTAAGGGATGCACAATCCTCCTTAAAACTGTATCACTTCCTGGAGTTTTTGTGTGGGATGCTAATACCTCTGCTCCCGCATATTCACTTGAGGGAGAGCTTCAAGACCTCCTCACTAAACAGTGA 882 0.4059 MSQSSDIKAVVRPIIFREYITECLDAFPASIINENMSQFHFILGFATDTYLQDGTGTGNFTRTWNVDDFSPTKVLNLKQEHRNVKVVISIGGHGPEDVFNPYDKEEWIKNAKSSIKDLLLDYKVESTPVNIYTIDGIDINYEIIKSNEDDFAYCIGKVIKQLKEDPQVLNSVNVVSIAPTEDLQPHYRTLYLENQDNIDWINYKFYNQSFDSENEFVKLFKILLFQYRTPCKLLPGVSTNTSSPSPMTTDIFVKGCTILLKTVSLPGVFVWDANTSAPAYSLEGELQDLLTKQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3349 293 PANTHER CHITINASE 2-LIKE 11 292 - -
Psa1g3349 293 SUPERFAMILY (Trans)glycosidases 38 279 IPR017853 -
Psa1g3349 293 PRINTS 2-S globulin family signature 13 26 IPR000677 -
Psa1g3349 293 PRINTS 2-S globulin family signature 74 92 IPR000677 -
Psa1g3349 293 PRINTS 2-S globulin family signature 97 111 IPR000677 -
Psa1g3349 293 PRINTS 2-S globulin family signature 196 219 IPR000677 -
Psa1g3349 293 PRINTS 2-S globulin family signature 254 273 IPR000677 -
Psa1g3349 293 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 134 142 IPR001579 GO:0004553|GO:0005975
Psa1g3349 293 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 14 293 IPR001223 GO:0005975
Psa1g3349 293 PANTHER CHITINASE 2 11 292 - -
Psa1g3349 293 Pfam Glycosyl hydrolases family 18 64 208 IPR001223 GO:0005975
Psa1g3349 293 Gene3D Glycosidases 13 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3349 Psa-Chr1 293017672 293019145 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3349 - - mtr:MTR_0443s0040 266.544