Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa1g3330 | ATGGAACCACATTCAGAGCCTCCGGCCACCGCCACCGGCGAAACCATAAGCAAAAACGCACTGAAGCGTGAACTCAAGAACAAGCAGAGAGAAGAGCTTTTGAAGAAAAAGGAAGAGGAGAAAGCCAGAAAGGCTCTTGAAACACTAAGTGTCAAAGAGAACAAACCTGCCGCTGCTGATGACGAAGATATGGATCCAACGCAATACCTGGAGAATAGGCTAAAGTATCTTGCAACTGAAAAAGCAGAAGGGAGAAACCCATATCCACACAAATTCGCTGTCACTATGTCTATTGATCAATACATCAAGGAATATGAAGGTTTAGGCGATGGGCAACACCTCGAGGATGTTTCTGTGTCTTTGGCTGGCCGAATCATGCACAAACGTGCCTCTGGTGCAAAGCTTGTCTTTTATGACCTGCATGGTGGTGGTTTTAAGGTTCAGGTTATGGCAGATGCGAGAAAATCGGACTTGAATGAGGCTGAGTTTTCCAAGTTCCATTCTAATGTTAAGCGTGGTGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATTTTCCCCAAAACTTTTGTGGCGCTGTCTCATTGTTTGCATATGATGCCAAGACAAAAATCTGCGGCTGCAGCTGATACTTCAAATGTGAAGAAAAATGCATGGGTACCAGGAAGTACCAGGAATCCCGAAGCATACATTTTGAAAGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGATTAATCCAGAGGTTCGAGAAATATTCAAGACTAGGTCAAAAATCATTTCTTACATTAGGTCGTTCCTGGACAAGCTTGATTTCTTAGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGTGCTGCTGCTAAGCCATTTGTAACTCATCATAATGACCTTAACATGAGATTATTCATGAGAATTGCTCCAGAACTCTATCTCAAGGAGTTGGTTGTAGGTGGGCTGGACCGTGTTTATGAAATTGGGAAGCAATTTAGGAATGAGGGTATAGATTTGACTCACAATCCCGAGTTTACTACCTGTGAGTTCTATATGGCTTATATGGACTACAATGACGTAATGGAGCTAACAGAGAACTTGTTAAGTGGTATGGTCAAGGAACTTACAAAGGGCAGCTATAAAATCAAGTATCATGCAAATGGGATTGATAAGGATCCTATTGAAATTGACTTCACTCCACCATTCAGAAGGATTGACATGATTGAAGGATTAGAGCAGATTGCTGGCCTCAGTATTCCCAAAGACTTGGCGAGTGATGAAACTAATCAATATCTGAAGAATGCCTGTTTGAAGTACGAAATCAAATGCCCCCCTCCTGAAACAACTACTCGTTTGTTGGATAAGCTTGTCGGGCACTTTTTGGAGGAAACATGTGTCAATCCCACATTCATCATAAACCATCCTGAGATAATGAGTCCGTTGGCAAAGTGGCACAGATCAAAACCTGGCCTGACAGAGCGTTTTGAATTGTTTGTTAACAAACATGAGATTTGCAACGCCTACACTGAATTGAATGACCCTGTGGTACAACGACAAAGATTTGCTGAGCAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGGCCTTAGACGAGACATTTTGTACCGCTTTGGAGTATGGTTTGCCACCAACTGGTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGTTATTGACTGACTCCCAAAATATCAAGGAGGTTCTTCTCTTCCCAGCAATGAAACCTCAAGATTGA | 1788 | 0.4256 | MEPHSEPPATATGETISKNALKRELKNKQREELLKKKEEEKARKALETLSVKENKPAAADDEDMDPTQYLENRLKYLATEKAEGRNPYPHKFAVTMSIDQYIKEYEGLGDGQHLEDVSVSLAGRIMHKRASGAKLVFYDLHGGGFKVQVMADARKSDLNEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVALSHCLHMMPRQKSAAAADTSNVKKNAWVPGSTRNPEAYILKDQETRYRLRHLDLMINPEVREIFKTRSKIISYIRSFLDKLDFLEVETPMMNMIAGGAAAKPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDVMELTENLLSGMVKELTKGSYKIKYHANGIDKDPIEIDFTPPFRRIDMIEGLEQIAGLSIPKDLASDETNQYLKNACLKYEIKCPPPETTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVNKHEICNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD* | 596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa1g3330 | 595 | CDD | LysRS_core | 256 | 593 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Psa1g3330 | 595 | TIGRFAM | lysS_bact: lysine--tRNA ligase | 66 | 594 | IPR002313 | GO:0004824|GO:0005524|GO:0006430 | |
| Psa1g3330 | 595 | SUPERFAMILY | Nucleic acid-binding proteins | 64 | 208 | IPR012340 | - | |
| Psa1g3330 | 595 | CDD | LysRS_N | 118 | 253 | IPR044136 | GO:0000166 | |
| Psa1g3330 | 595 | PANTHER | LYSYL-TRNA SYNTHETASE | 10 | 595 | - | - | |
| Psa1g3330 | 595 | Gene3D | - | 67 | 209 | IPR012340 | - | |
| Psa1g3330 | 595 | Pfam | OB-fold nucleic acid binding domain | 119 | 194 | IPR004365 | GO:0003676 | |
| Psa1g3330 | 595 | PANTHER | LYSINE--TRNA LIGASE | 10 | 595 | - | - | |
| Psa1g3330 | 595 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 263 | 593 | IPR006195 | - | |
| Psa1g3330 | 595 | Gene3D | Bira Bifunctional Protein; Domain 2 | 237 | 595 | IPR045864 | - | |
| Psa1g3330 | 595 | Hamap | Lysine--tRNA ligase [lysS]. | 72 | 594 | IPR002313 | GO:0004824|GO:0005524|GO:0006430 | |
| Psa1g3330 | 595 | Coils | Coil | 18 | 55 | - | - | |
| Psa1g3330 | 595 | PRINTS | Lysyl-tRNA synthetase signature | 278 | 288 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Psa1g3330 | 595 | PRINTS | Lysyl-tRNA synthetase signature | 294 | 310 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Psa1g3330 | 595 | PRINTS | Lysyl-tRNA synthetase signature | 323 | 336 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Psa1g3330 | 595 | PRINTS | Lysyl-tRNA synthetase signature | 341 | 358 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Psa1g3330 | 595 | PRINTS | Lysyl-tRNA synthetase signature | 476 | 492 | IPR018149 | GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 | |
| Psa1g3330 | 595 | PIRSF | LysRS2 | 5 | 595 | IPR034762 | GO:0004824|GO:0005524|GO:0006430 | |
| Psa1g3330 | 595 | Pfam | tRNA synthetases class II (D, K and N) | 241 | 591 | IPR004364 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Psa1g3330 | 595 | MobiDBLite | consensus disorder prediction | 19 | 66 | - | - | |
| Psa1g3330 | 595 | SUPERFAMILY | Class II aaRS and biotin synthetases | 241 | 592 | IPR045864 | - | |
| Psa1g3330 | 595 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa1g3330 | K04567 | - | gmx:100785660 | 1058.13 |