Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3309 ATGGCAGTTTCCATGAGAGATGTGGATCCAGCTTTCCAGGGAGCTGGACAAAAGGCTGGACTTGATATATGGCGTATTGAGAATTTTAATCCAATATCTGTCCCAAAGTCCTCTTATGGCAAATTTTTCACCGGGGATTCTTATGTGATCTTAAAGACAACCGCATCAAAAAGTGGAGCTCTGCGTCATGACATCCATTACTGGATTGGTAAAGACACTAGTCAGGATGAAGCTGGTGTGGCAGCCATCAAGACTGTTGAGCTGGATGCAGCTCTTGGAGGACGCGCTGTTCAGTATCGGGAAGTACAGGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCGTGTATTATACCTCTAGAAGGTGGAGTTGCTTCTGGTTTTAAACATGCTGAGGCTGAAAAACATAAGACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTGCATGTCAAAGAGGTTCCTTTTGCTCGATCTTCACTCAACCATGACGATATTTTTGTTCTTGACACTGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATCAAAGATACCTACCACGAGGGAAAGTGCGAGATAGCTGCCATTGAGGATGGAAAGTTAATGGCTGATCCTGAAACTGGGGAGTTCTGGGGTTTCTTTGGCGGATTTGCTCCTCTTCCACGAAAAGCAGCCAGTGATGATGACAAGTCTGCTGATTCTCACCCTCCAAAACTGCTTTGTGTTGAAAACGGACAAGCCGAACCGGTTGAGGCCGATTCTTTCAAAAGGGAGTTTCTAGACACAAATAAATGTTTTATTCTGGATTGTGGGTTGGAAATGTTTGTCTGGATGGGAAGAAACACCTCTCTTGATGACAGAAAAAGTGCAAGCGGAGTTGCTGATGAGTTAGTCAGTGGCATTGATCAACTTAAACCCCAAATAATTCGAGTAATTGAAGGATTTGAAACAGTACTGTTTAAGTCCAAGTTTGATTCTTGGCCTCAGACCCCTGATGTAACTGTATCAGAAGATGGACGTGGCAAGGTAGCAGCACTTCTGAAACGTCAAGGAGTAAATGTCAAGGGTCTGTTGAAGGCTGATGCAGTAAAAGAAGAACCTCAACCTTACATTGACTGCACTGGACATTTGCAGGTTTGGCGCGTGAACGGTCAGGAAAAGATTCTTCTCCCAGCTTCTGATCAATCAAAATTTTATAGTGGAGATTGCTTCATCTTTCAATATTCATATCCTGGAGAAGATAAGGACGATTGTCTTATTGGAACGTGGATAGGAAAGAACAGTGTTGAGGAAGAAAGAGCTTCAGCTAATTCACTGGCTAGTAAAATGGTTGAGTCAATGAAGTTTCTGGCTTCCCAGGCTCGTATTTATGAAGGCAATGAACCAATTCAATTTCATTCTATCCTACAAACCTTCATAGTTTTTAAGGGTGGGCTTGGTGATGCATACAAGACTTACATTGCAGAAAAGGAAATTCCAGATGAGACATACAGTGAGGATGGTGTTGCATTATTCCGCATCCAGGGCTCTGGACCAGATAATATGCAAGCTATACAAGTTGAACCTGTTGCTTCTTCCTTGAATTCCTCTTATTGCTACATACTTCATAATGGGCCTGCTGTCTTTACTTGGTCTGGAAGCAATACAAGTGCAGAAGACCAGGAACTTGTAGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCAAAACCACAAAGGGAAGGTACAGAATCTGAACAGTTTTTGGATTTGTTGGGAGGAAAATCAGAATATCCCAGTCAAAAGATTAGTAGGGAGGCTGAAAGTGATCCTCACCTATTTTGTTGCAACTTCTCAAAAGGAAAGTTAAAGGTGACGGAGATATACAACTTCTCCCAGGATGATTTAATGACAGAAGACATTTTCATCTTGGATTGTTACTCAGATATATTTGTCTGGGTTGGTCAGGAGGTTGACACCAAAAGTAGAATGCAGGCACTAACAATTGGTGAGAAATTTCTTGAGCATGATTTTCTGCTGGAAAAAATATCACGCGTGGCTCCAATATATGTTGTCATGGAAGGGAGTGAGCCACCGTTTTTCACTCGCTTTTTTAACTGGGAGTCAGCAAAGTCTGCAATGTTGGGGAACTCATTTCAAAGGAAGCTTAAAATAGTAAAAAATGGGGGTACTGCACCAGTGGCTGTAAGGCATTTCATTTTCTTACAATCACTAATGAAATGA 2277 0.4155 MAVSMRDVDPAFQGAGQKAGLDIWRIENFNPISVPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWIGKDTSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPLEGGVASGFKHAEAEKHKTRLFVCRGKHVVHVKEVPFARSSLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHEGKCEIAAIEDGKLMADPETGEFWGFFGGFAPLPRKAASDDDKSADSHPPKLLCVENGQAEPVEADSFKREFLDTNKCFILDCGLEMFVWMGRNTSLDDRKSASGVADELVSGIDQLKPQIIRVIEGFETVLFKSKFDSWPQTPDVTVSEDGRGKVAALLKRQGVNVKGLLKADAVKEEPQPYIDCTGHLQVWRVNGQEKILLPASDQSKFYSGDCFIFQYSYPGEDKDDCLIGTWIGKNSVEEERASANSLASKMVESMKFLASQARIYEGNEPIQFHSILQTFIVFKGGLGDAYKTYIAEKEIPDETYSEDGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPAVFTWSGSNTSAEDQELVERMLDLIKPNLQSKPQREGTESEQFLDLLGGKSEYPSQKISREAESDPHLFCCNFSKGKLKVTEIYNFSQDDLMTEDIFILDCYSDIFVWVGQEVDTKSRMQALTIGEKFLEHDFLLEKISRVAPIYVVMEGSEPPFFTRFFNWESAKSAMLGNSFQRKLKIVKNGGTAPVAVRHFIFLQSLMK* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3309 758 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Psa1g3309 758 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Psa1g3309 758 SMART VILL_6 19 117 IPR007122 GO:0051015
Psa1g3309 758 SMART VILL_6 137 234 IPR007122 GO:0051015
Psa1g3309 758 SMART VILL_6 519 606 IPR007122 GO:0051015
Psa1g3309 758 SMART VILL_6 254 344 IPR007122 GO:0051015
Psa1g3309 758 SMART VILL_6 392 489 IPR007122 GO:0051015
Psa1g3309 758 SMART VILL_6 622 719 IPR007122 GO:0051015
Psa1g3309 758 PANTHER VILLIN-4 1 739 - -
Psa1g3309 758 SUPERFAMILY Actin depolymerizing proteins 129 241 - -
Psa1g3309 758 Gene3D Severin 388 500 IPR029006 -
Psa1g3309 758 Gene3D Severin 517 612 IPR029006 -
Psa1g3309 758 Gene3D Severin 247 355 IPR029006 -
Psa1g3309 758 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Psa1g3309 758 Pfam Gelsolin repeat 266 334 IPR007123 -
Psa1g3309 758 Pfam Gelsolin repeat 410 479 IPR007123 -
Psa1g3309 758 Pfam Gelsolin repeat 150 216 IPR007123 -
Psa1g3309 758 Pfam Gelsolin repeat 638 712 IPR007123 -
Psa1g3309 758 Pfam Gelsolin repeat 32 111 IPR007123 -
Psa1g3309 758 CDD gelsolin_S5_like 517 608 - -
Psa1g3309 758 CDD gelsolin_S2_like 138 223 - -
Psa1g3309 758 CDD gelsolin_S3_like 254 343 - -
Psa1g3309 758 SUPERFAMILY Actin depolymerizing proteins 511 615 - -
Psa1g3309 758 Gene3D Severin 7 132 IPR029006 -
Psa1g3309 758 CDD gelsolin_S4_like 386 485 - -
Psa1g3309 758 CDD gelsolin_S1_like 12 124 - -
Psa1g3309 758 PANTHER VILLIN 1 739 IPR007122 GO:0051015
Psa1g3309 758 CDD gelsolin_S6_like 621 718 - -
Psa1g3309 758 Gene3D Severin 613 733 IPR029006 -
Psa1g3309 758 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Psa1g3309 758 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Psa1g3309 758 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 427 IPR036180 -
Psa1g3309 758 Gene3D Severin 133 246 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3309 Psa-Chr1 290431551 290445350 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3309 - - gmx:100809968 1378.62