Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3285 AAGGGTATAGATCATGATTTTGTTAGTTATACTATACTCATTGATGGGTTTTCTAAGTTAGGTGATGTTGAAAAGTCTTTTACTTTTTTGGCTAAGATGATTAAAGAAGGTATTAGACCTAATAAGGTTACTTATACTGCAATTCTGTCTGCATATTGTAAGAAGGGTAAAGTAGAGGAAGCATTTGGTGTTTTCAATAGGATGAAAGATATGGGAGTTGAGTTGGATGAATTTGTGTTTGTGGTTTTGATTGATGGATTTGGAAGGGTAGGAGATTCTGATCGGGTGTTTCAACTTTTTGATGAAATGGAGAAGAGGGGGATTAGGCCTAGTGTTGTTACGTATAATGCTGTTGTGAATGGTTTGTCGAAGTTTGGGAGGACACAAGAGGCGGATGAGTTCTCGAAAAACGTGGCTGCAGATGTAATTACGTACAGCACGTTGTTGCATGGGTATACCGAAGAAGAGAATGTGTTGGGGATTTTGCAAACAAAGAAGCGGTTGGAAGAAGCTGGTATCTCCATGGATGTTGTAATGTGTAATGTATTGATTAGAGCATTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCACTTTACAAAGGAATGCCGGAAATGGATTTGGTACCGGATTCTGTTACTTATTGCACGATGGTTGATGGGTATTGCAAGGTTGGTAGAATTGATGAGGCACTTGAGGTATTTGACGACTTCAGAAAGACATTGATATCTTCATATGAATGCTACAATAGTATCATCAATGGCCTTTGCAAGAAGGGTATGGTAGAAATGGCCATTGAAGCATTGCTTGAACTCAATCACAAATGTCTCATGTTGGATACAGGTACATATAGGTTGTTAATGAAGACGATTTTCAAAGAAAACGATTCAAAAACGGTTTTAGATTTAGTTTGCAGAATGGAAGGTTTAGGGCCAGATATATATGATGCAGTATGTAATGATTCCATATATTTATTATGTAAAAGAGGATTGCTCAGTGATGCGACTCAATTGTGCATTGCGATGAAAAAGAAAGGGTTACCTGTCACATGCAAGTCTTATTATTCACTTTTGAGAAGGCTTCTTTGTGTTGTTGGGAATAATGAGCAAGTTCCTCCCCTTTTGAATAGCTTTCTGAAAGAGTGCGGTCTAGTCGAACCAAAGGTTCAAAAGTTACTCGCACGATACCTTTGTCTGAAAGATGTCGATAGTGCCCTTCAATTTCTTAGAAAAACAGTGCACAATTCTTCAGAAATCACCTTTCCTGTATCCATTCTCAAGATTCTCATAAAGGAGGGTAGAGCTTTAGATGCATATAAGCTTCTTACCGGGGTTCAAGATAATTTACCAGTCATGTATATTGATTATGCCATCGTGATCCATGGCTTATGCAAGGGAGGATATCTCAATAAAGCGTTGGATCTTTGTGCCTTTATTGAAAAGGAAGGGATGAATTTGAACATAGTCGTATATAATTCAATAATAAACGGATTGTGCCATGAGGGATGTCTTATTGAAGCGTTTCGACTATTTGATTCTTTAGAGAAACTTAATTTGATGACCTCAGAAATAACTTATGCTACATTAATTTATGCTCTATGTAGAGAGGGATACTTGCAAGACGCAGAGCATGTTTTCACTAAAATGGTCAGGAACGGGTTTCAACCAAAAACACAAGTTTACAATTCATTGCTCGATGCTATATCTAAGTTTGGACAATTAGAAAAGGCATTTGAGCTTCTTAATGATATGGAGAAAAAATATGTCGAGTTTGACAATTTCACAGTTAGCTCTGTAATAAATTGCTATTGCCAAAAGGGCGACATGGAAGGAGGTCTTGAATTCTATTATAAGTTCAAGGGAAAAGATATATTACCCGATTTTTTAGGGTTCTTGTATTTGATAAGAGGTCTATGTACCAAGGGAAGGATGGAAGAAGCAAGGAGTGTATTGAGAGAAATGCTCCAATTCAAGAATGTTACCGAGATGATTAATATTGTCAACAGTGAGGTTGATACCGAGTCAATAAGCGACTTTCTCGCCACTTTGTGTGAGCAAGGAAGCATTCTAGAAGCTGTAGCAGTACTCAATGAAATTGCAAGCGTGTTTTTTCCCGTGCAAAAGTCGTCTGCTTATAATCAAGGAACCGATAAATCACAGAAGAATTATGAATCAAAATATTTTGGTTTTAAATCTTCGACCTCTCTACGTTCGTCTTGCAAAAGTGGTTTAGATTTTGATTTCTATTATTCTAGAATTGCTGCACTATGTACCAAAGGGGAGCTGCAGGATGCTAATCAATTAGCAAAGGAAATGCTTTCTGACATGGAAGAGTCTATGAACTGA 2346 0.3734 KGIDHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIRPNKVTYTAILSAYCKKGKVEEAFGVFNRMKDMGVELDEFVFVVLIDGFGRVGDSDRVFQLFDEMEKRGIRPSVVTYNAVVNGLSKFGRTQEADEFSKNVAADVITYSTLLHGYTEEENVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLVPDSVTYCTMVDGYCKVGRIDEALEVFDDFRKTLISSYECYNSIINGLCKKGMVEMAIEALLELNHKCLMLDTGTYRLLMKTIFKENDSKTVLDLVCRMEGLGPDIYDAVCNDSIYLLCKRGLLSDATQLCIAMKKKGLPVTCKSYYSLLRRLLCVVGNNEQVPPLLNSFLKECGLVEPKVQKLLARYLCLKDVDSALQFLRKTVHNSSEITFPVSILKILIKEGRALDAYKLLTGVQDNLPVMYIDYAIVIHGLCKGGYLNKALDLCAFIEKEGMNLNIVVYNSIINGLCHEGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFTKMVRNGFQPKTQVYNSLLDAISKFGQLEKAFELLNDMEKKYVEFDNFTVSSVINCYCQKGDMEGGLEFYYKFKGKDILPDFLGFLYLIRGLCTKGRMEEARSVLREMLQFKNVTEMINIVNSEVDTESISDFLATLCEQGSILEAVAVLNEIASVFFPVQKSSAYNQGTDKSQKNYESKYFGFKSSTSLRSSCKSGLDFDFYYSRIAALCTKGELQDANQLAKEMLSDMEESMN* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3285 781 PANTHER ATPASE EXPRESSION PROTEIN 3 480 779 - -
Psa1g3285 781 PANTHER ATPASE EXPRESSION PROTEIN 3 2 291 - -
Psa1g3285 781 PANTHER ATPASE EXPRESSION PROTEIN 3 323 387 - -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 248 271 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 8 41 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 524 556 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 213 240 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 560 586 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 79 112 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 43 77 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 178 212 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 595 627 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 489 516 IPR002885 -
Psa1g3285 781 TIGRFAM PPR: pentatricopeptide repeat domain 634 657 IPR002885 -
Psa1g3285 781 Pfam PPR repeat 634 656 IPR002885 -
Psa1g3285 781 Pfam PPR repeat 456 483 IPR002885 -
Psa1g3285 781 Pfam PPR repeat 248 271 IPR002885 -
Psa1g3285 781 Pfam PPR repeat 8 38 IPR002885 -
Psa1g3285 781 Pfam PPR repeat 113 133 IPR002885 -
Psa1g3285 781 Pfam Pentatricopeptide repeat domain 136 186 IPR002885 -
Psa1g3285 781 Gene3D Tetratricopeptide repeat domain 1 135 IPR011990 GO:0005515
Psa1g3285 781 Gene3D Tetratricopeptide repeat domain 537 746 IPR011990 GO:0005515
Psa1g3285 781 Gene3D Tetratricopeptide repeat domain 367 534 IPR011990 GO:0005515
Psa1g3285 781 Gene3D Tetratricopeptide repeat domain 245 320 IPR011990 GO:0005515
Psa1g3285 781 PANTHER FERTILITY RESTORER-LIKE 2 291 - -
Psa1g3285 781 PANTHER FERTILITY RESTORER-LIKE 323 387 - -
Psa1g3285 781 PANTHER FERTILITY RESTORER-LIKE 480 779 - -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Psa1g3285 781 Coils Coil 759 779 - -
Psa1g3285 781 Gene3D Tetratricopeptide repeat domain 136 244 IPR011990 GO:0005515
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Psa1g3285 781 Pfam PPR repeat family 487 535 IPR002885 -
Psa1g3285 781 Pfam PPR repeat family 40 87 IPR002885 -
Psa1g3285 781 Pfam PPR repeat family 556 605 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Psa1g3285 781 Pfam PPR repeat 207 237 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Psa1g3285 781 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 6 40 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3285 456 699 Miscellaneous Gene Families AT4G11690 25.090 4.93e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3285 - K17964 gmx:100783405 1212.21