Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3244 ATGTATGAATTGCAACAGTTTGAGTTTCTTCACCAAGATCATCAAATTACGATGAAGATGGATGATATGAGAAGAAAGAAGAAGAAGGAGACAAAAAAAGCATCTACGAAAGAAGATAGGGCTCGTGTTGTTGACTTGAATGGCATGTCTTTGGACTCCCTTCCAAAATTTTCCATTGATTTAGCTTTCATTCGCAATCTCAACTTGTCTAACAACAATCTTCAGAACATTCCAGAGTCGTTAACGGCGAGATTACTGAATTTGGAGAAGTTAGACGTGCACTCCAACCAGCTCAGATCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTTCAAGTTTTGAATGTTTCTGGAAACTTCGTCCAATCTCTCCCTGCAACCATTGAAAATTGCAGAGCCTTAGAAGAATTGAATATCAACTTCAACATTCTGAGCAAGCTTCCAGACACAATAGGCTTTGAGCTTATAAAACTCAAGAAGCTTTCTGTCAACTCCAACAAGCTCGTCTTTCTTCCTAGCTCCACCTCTCACCTAATGGCTCTTACCGTTCTCGACGTACGTTTGAACTGTCTCAGAAGTCTCCCGGACAACCTTGAGAACCTCATCAATCTTGAGACCCTGAATGTTAGCCAGAATTTTCGGTATTTGGAGTCATTGCCATACTCTATAGGACTCCTCTTGTCTCTGGTCGAACTAGACGTCAGCTACAACAATATCAAAACATTGCCTGATTCCATTGGTTGCCTCCAGAAGCTTCAAAAGCTAAGTGTGGAAGGGAACCCGCTTGTTTCGCCTCCGCCGGAGGTGGTGGAGCAGGGTCTGCATGTGGTGAAGGAGTATATGTGCCATAAAATGAACTCCGGCGATAAAACGCCAACCAAGAAGAGATGGTGGAAGGTTAAATTAGGGACGTTTAACGGACACATGAGAAGTGGGAAACAACTGAAACATGAGGCTTTCAGCCCGCTTCAGTATCAACCGATGAATGGCCTTGCGTCACCAGGCTTCATGTGGAAGTTGTCGCCTCTTCGCCTTTTCTCACCCCGTCGTCGTTCCTTAAGTTAA 1065 0.4385 MYELQQFEFLHQDHQITMKMDDMRRKKKKETKKASTKEDRARVVDLNGMSLDSLPKFSIDLAFIRNLNLSNNNLQNIPESLTARLLNLEKLDVHSNQLRSLPNSIGCLSKLQVLNVSGNFVQSLPATIENCRALEELNINFNILSKLPDTIGFELIKLKKLSVNSNKLVFLPSSTSHLMALTVLDVRLNCLRSLPDNLENLINLETLNVSQNFRYLESLPYSIGLLLSLVELDVSYNNIKTLPDSIGCLQKLQKLSVEGNPLVSPPPEVVEQGLHVVKEYMCHKMNSGDKTPTKKRWWKVKLGTFNGHMRSGKQLKHEAFSPLQYQPMNGLASPGFMWKLSPLRLFSPRRRSLS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3244 354 Pfam Leucine rich repeat 65 119 IPR001611 GO:0005515
Psa1g3244 354 Gene3D Ribonuclease Inhibitor 154 281 IPR032675 -
Psa1g3244 354 Gene3D Ribonuclease Inhibitor 4 153 IPR032675 -
Psa1g3244 354 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 347 - -
Psa1g3244 354 ProSiteProfiles Leucine-rich repeat profile. 87 108 IPR001611 GO:0005515
Psa1g3244 354 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 347 - -
Psa1g3244 354 Coils Coil 20 40 - -
Psa1g3244 354 SUPERFAMILY L domain-like 40 267 - -
Psa1g3244 354 ProSiteProfiles Leucine-rich repeat profile. 63 84 IPR001611 GO:0005515
Psa1g3244 354 SMART LRR_bac_2 131 150 - -
Psa1g3244 354 SMART LRR_bac_2 85 104 - -
Psa1g3244 354 SMART LRR_bac_2 61 80 - -
Psa1g3244 354 SMART LRR_bac_2 226 245 - -
Psa1g3244 354 SMART LRR_bac_2 155 174 - -
Psa1g3244 354 SMART LRR_bac_2 201 222 - -
Psa1g3244 354 SMART LRR_bac_2 108 127 - -
Psa1g3244 354 SMART LRR_bac_2 178 197 - -
Psa1g3244 354 SMART LRR_typ_2 61 84 IPR003591 -
Psa1g3244 354 SMART LRR_typ_2 108 131 IPR003591 -
Psa1g3244 354 SMART LRR_typ_2 178 201 IPR003591 -
Psa1g3244 354 SMART LRR_typ_2 85 107 IPR003591 -
Psa1g3244 354 SMART LRR_typ_2 249 272 IPR003591 -
Psa1g3244 354 SMART LRR_typ_2 155 177 IPR003591 -
Psa1g3244 354 SMART LRR_typ_2 226 248 IPR003591 -
Psa1g3244 354 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3244 Psa-Chr1 285275742 285278187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3244 64 312 Receptor kinase-like Gene Family AT5G51350 30.038 9.27e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3244 - - lja:Lj6g3v1315120.1 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3244 1 285275742 285278187 Psa1g3244 1 285275742 285278187 ECH