Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3227 ATGATCAATGGTAAAGATGTATACAAGATTCTTGAGAGCATTTTCCCCTTATATGTTGCAATGATGTTAGGTTATGCTTCAATAAAATGGTGGAAAATTTTCACACCAGATCAATGTGCTGGTGTAAACCGTTTTGTCGCAATGTTCGCAGTTCCAACACTTACGTTCACTTACATAATTCCAATAGATCCTTATCACATGAATTGGAGGATAATAATAGCTGACACACTTCAAAAAATTGTGACATTATTGTGTCTAATCCTATGGAACATTTTCACAAAACGAGGTAGTTTCGATTGGACAATAACCGTTTTTTCACTTATTAATTTACCTAACACACTTGTTGTTGGGATTCCTTTGTTACAAGCTATGTATGGAGATGTTTCGACGCCGCTTTTGATTCAGATTGTGTTCATGCAAGCTGTTTTGTGGTATACACTTTTGTTGATAATGTATGAGTATCGAGCGGCGAAGATATTTATTTCGCAACAGTTTGTGGTGAGGAATGAGGATGGGACGGAGTCGGTTTTGTCGGAGTCGGAGAAGATTGATATCGGGTCGAATGTTGATTTGGAGTTGGGTGAACTTTTGCATAGTTTGAGTGTTAGGTCTGGTTCGAGAAAGAATAGTTTTGATGAGAAGGGGTTGTTTAGGAAGAGTAAGAGTAGTTGTAGTAGTGCAAATTTGAGTATGGGATTGAAAAGTATGAAGAGTAGGAGTGTGAGGATTTCACCTCAACCAATTCTGGAATCTATTAGTGGTAAAAGAAACATGAGTTCTAATGGACGTTTGACACATGAAATTGAACCATCACAAGTTGATAACTTTGAATTGCTTGGAATTAAAGTAACAGAGAAAGAGCATGAGAGCAAGGAAGAACAAATGGAGGAGATTAAAGAAGAAATTACTGAAGAAGAACAAATGGCACCTAGCCAATCTATGGTGTTAAAGCTCATTGTAATTAGGGTTTATAAGAAACTCATAAAAAACCCTAATCTCTGGGCTTCTGTTCTTGGCATTATATGGGCTCTCATAGCAGCTAGGTTGAACATTAAATTGCCAACAATCATATATGAATCTATTACAATAATATCTAAAACTGGACTAGGAATGTCCATGTTTAGTCTAGGCATATTCATGGCATTACAACCGAAGATCATTTCTTGTGGAAAAACTGCAACAGCAATGTCTATGCTACTTAAGTTCTTGCTTGGCCCTGCATTGTTTGGCGCTACCTCTGCGGCGGTTGGTGTCCGCGGAGATGTTTTTAAAATAGGAATTGTTCAGGCTGCTCTTCCTCAAGGTATTGTTCCATTTGTCTTTGCCAAAGAGTATAATCTACATGCGGAAATATTCAATACAGCGTAA 1368 0.3757 MINGKDVYKILESIFPLYVAMMLGYASIKWWKIFTPDQCAGVNRFVAMFAVPTLTFTYIIPIDPYHMNWRIIIADTLQKIVTLLCLILWNIFTKRGSFDWTITVFSLINLPNTLVVGIPLLQAMYGDVSTPLLIQIVFMQAVLWYTLLLIMYEYRAAKIFISQQFVVRNEDGTESVLSESEKIDIGSNVDLELGELLHSLSVRSGSRKNSFDEKGLFRKSKSSCSSANLSMGLKSMKSRSVRISPQPILESISGKRNMSSNGRLTHEIEPSQVDNFELLGIKVTEKEHESKEEQMEEIKEEITEEEQMAPSQSMVLKLIVIRVYKKLIKNPNLWASVLGIIWALIAARLNIKLPTIIYESITIISKTGLGMSMFSLGIFMALQPKIISCGKTATAMSMLLKFLLGPALFGATSAAVGVRGDVFKIGIVQAALPQGIVPFVFAKEYNLHAEIFNTA* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3227 455 Coils Coil 281 308 - -
Psa1g3227 455 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 219 455 - -
Psa1g3227 455 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 180 - -
Psa1g3227 455 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 180 IPR033526 GO:0010315|GO:0010329
Psa1g3227 455 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 219 455 IPR033526 GO:0010315|GO:0010329
Psa1g3227 455 Pfam Membrane transport protein 10 454 IPR004776 GO:0016021|GO:0055085
Psa1g3227 455 TIGRFAM 2a69: auxin efflux carrier 1 455 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3227 Psa-Chr1 283929450 283932662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3227 296 455 Organic Solute Cotransporters AT1G23080 51.250 1.97e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3227 K13947 - mus:103998154 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3227 1 283929450 283932662 Psa1g3227 1 283929450 283932662 ECH