Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3025 ATGCTTAGAAGATCCTATTTTCCTGAATTCAAACAAAAAGACGATTACAATGCACCAAACGGCCCCGCCGGATATTCATGCAAAACACCCAAAAAGGTAACCGTGGACGACTTCGTCTTCCACGGCCTAGCCACAGGTGGAAACACCACAAACATTATCAAAGCCGCTGTTACGCCTGCATTCGACGCGCAATTTCCCGGCGTAAACGGACTTGGAATTTCCATTGCGCGTTTAGATTTAGCTCCAGGTGGAGTTATTCCACTTCACACTCACCCCGGTGCTTCAGAAGTATTGGTTGTTATTCAAGGAACCATTCTCGCTGGTTTTGTTTCATCTGCTAACGTTGTTTACCTTAAAACACTTAACAAAGGTGATGTTATGGTTTTTCCACAAGGGTTGTTGCATTTCCAAATTAACAGTGGTCGTTCTAATGCACTTGCTTTTGTTAGCTTTAGTAGTGCTAATCCTGGTTTGCAGATATTGGATTTCGCTTTGTTTAAGAGTGATTTTCCTACTGAATTGATTACTGCAAACTACTTTTCTTGA 546 0.4212 MLRRSYFPEFKQKDDYNAPNGPAGYSCKTPKKVTVDDFVFHGLATGGNTTNIIKAAVTPAFDAQFPGVNGLGISIARLDLAPGGVIPLHTHPGASEVLVVIQGTILAGFVSSANVVYLKTLNKGDVMVFPQGLLHFQINSGRSNALAFVSFSSANPGLQILDFALFKSDFPTELITANYFS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3025 181 PRINTS Germin signature 89 109 IPR001929 GO:0030145
Psa1g3025 181 PRINTS Germin signature 119 139 IPR001929 GO:0030145
Psa1g3025 181 PRINTS Germin signature 152 167 IPR001929 GO:0030145
Psa1g3025 181 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 16 180 - -
Psa1g3025 181 CDD cupin_OxOx 15 177 - -
Psa1g3025 181 SUPERFAMILY RmlC-like cupins 20 177 IPR011051 -
Psa1g3025 181 SMART Cupin_1_3 41 176 IPR006045 -
Psa1g3025 181 ProSitePatterns Germin family signature. 84 97 IPR019780 GO:0030145
Psa1g3025 181 Gene3D Jelly Rolls 10 180 IPR014710 -
Psa1g3025 181 Pfam Cupin 43 179 IPR006045 -
Psa1g3025 181 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Psa1g3025 181 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3025 Psa-Chr1 264493290 264494137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3025 15 180 Miscellaneous Gene Families AT5G20630 71.687 7.91e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3025 - - gmx:100806553 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3025 1 264493290 264494137 Psa1g3025 1 264493290 264494137 ECH