Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3014 ATGACGTCCGTTTACATACCGGTTCAGAATTCTGAAGAGGAAGTTAGGGTTAATCTCGATCAACTTCCCAGGGATGCCTCTGATATCCTCGATATACTCAAGGCGGAGCAAGCACCTCTGGATCTTTGGCTCGTTATCGCGAGGGAGTACTTTAAGCAGGGAAAAGTTGATCAGTTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGATTATTATGCTGATATAAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGGGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAGAAGGAGGAGCATTTCATTTTGGCAACACAATATTACAATAAAGCATCAAGGATAGACATGCATGAACCCTCTACTTGGGTTGGAAAAGGTCAGCTTTTGTTAGCAAAGGGTGAGGTTGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGATCGTGACAATGTCCCGGCCCTTTTAGGCCAGGCATGTGTTGAGTTCAACCGTGGAAGATATTCTGATTCCCTCGAGTTGTATAAGAGGGCACTGCAAGTGTATCCCAATTGCCCTGCGGCTGTTAGACTTGGCATAGGTCTATGTCGCTACAAATTGGGTCAATTTGAAAAGGCTCGGCAGGCATTTGAGCGAGTTTTGCAGCTTGATCCAGAAAATGTCGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGCTCTAACGAAGCTGTTGGAATTAGGAAAGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCGTACTGTGCAATGGCTCTAAATTATCTTGCAAATCATTTCTTCTTTACTGGTCAACATTTTTTGGTTGAGCAACTGACAGAAACTGCATTATCTGTTACTAATCATGGTCCAACAAAGTCTCACTCTTATTACAATTTAGCACGCTCTTACCATAGCAAGGGGGACTACGATAAAGCTGGGGTTTATTACATGGCATCTGTCAAGGAAATTAGCAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTACAAATTAAGTTGGGAGATTTTAGAAGTGCACTCTCAAACTTTGAAAAGGTTTTGGAGGTGTACCCGGATAATTGTGAGACATTGAAAGCACTTGCGTACATATATGTTCAGCTTGGACAGACTGACAAGGGCCTTGAATTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAACTAGGAGAGTTGTTAATTTTGTCCGACACAGGAGCTGCACTAGATGCATTCAAAACTGCCCGCACTCTTTTTAAGAAGGGAAGCCAGGAAGTACCAATTGAATTACTCAATAATATTGGTGTCATTCAGTTTGAAAGGGGAGAATTTGAGCTTGCTAAACAAACTTTTAAGGAAGCTCTTAGTGATGGAATTTGGCTTTCTTTCTTTAGCGAGGCAAATAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAGTTCAAGGACATGCAATTATTTCACGACCTTGAAAGTAACGGTCACCTTGTTGAAGTACCATGGGATAAAGTCACAGTACTGTTTAATCTGGCCAGATTACTTGAGCAGTTAAATGAGTCTGGAACTGCAAGCATGTTATATCGCCTAATCTTGTTCAAGTACCCGGACTACATTGATGCGAATCTGAGGCTAGCTGCTATTGCAAAGGCTCGGAACAACATTTTATTGAGCATTGAACTGGTTAATGATGCCCTGAAGGTGAATGACAAGTGTCCAAATGCATTATCTATGCTGGGTGAGCTGGAATTGAAAAATGACGATTGGGTGAAGGCAAAAGAAACTCTCCGGGCAGCTAGTGATGCCACTGATGGGAAGGATTCATATGCTACACTTTCACTAGGAAACTGGAACTACTTTGCTGCAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAGCTTTATACAAGAGTTATGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCTGTTGTTTTTGCGGAAAAAGGCCATTTTGATGTTTCAAAAGATATCTTTACTCAGGTTCAAGAAGCTGCCAGCGGCAGTGTTTTTGTCCAGATGCCTGACGTTTGGATAAATCTGGCTCATGTTTATTTTGCTCAGGGGAATTTTGCTTTGGCTGTCAAAATGTATCAGAATTGCTTGCGGAAGTTTTATCATAACACAGATTCACAAATACTTCTATACTTGGCTCGTACCTATTATGAAGCCGAGCAGTGGCAAGACTGTATTAAAACTCTACAGAGAGCCATCCATTTGGCACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACCCTTCAAAAGGCCAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCAGGGCTGCAAAATGCTGTTCGTATATTTAGTCAGTTGTCTGCTGCTTCCAACCTGCATATCCATGGATTTGATGAGAAGAAGATTGACACTCATGTTGGATACTGCAGCCACTTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAACAACAAACACGCCAGAGACAAGAAGTTGCTCGTCAGGTTGCTTTGGCTGAGGAAGCCAGGCGCAAGGCTGAAGAGCAAAGGAAAATTCAGATGGAAAGAAGAAAGCATGAGGACGAGTTAAAACAAGTGCAACAACAGGAGGAACATTTTAACCGTGTTAAGGAACAATGGAAGAGCAGCACACATTCAAAACGGAGGGATAGGTCAGACGATGAAGATGGTGGGACTGGTGAGAAAAAGAGAAGAAAAGGTGGGAAGAGGAGGAAGAAGGATAAGCACTCAAAATCACGGAATGACACAGAAGAAGCAGAGGCTGATATGATGGATGAACAGGAAGTGGAGGATGAAGATGCTGATATGAATTCTAGAGAGGAGCCCCAAGCTCTGACGAATGATGCTGAGGAAAATCCCCACGGCCTTCTTGCAGCAGCTGGACTTGAGGATTCTGATGAAGATGATGAGCCGGCTGGACCTTCCTCAACCATTAGCAGGCGGAGGCAGGCATTATCAGAATCGGAAGACGAGGAACCAATAATTAGGCAATCAAGTCCGGTAAGAGAAAATTCTGTTGATATGCAGGAGAGTGATGGAGAAATTAGGGAGGAGAAGACATATGAAGACGAAGCCAGTGATGAGGAGAAATAA 3252 0.4277 MTSVYIPVQNSEEEVRVNLDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKVDQFRQILEEGSSPEIDDYYADIRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVALAIMDLRSNEAVGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALSVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDFRSALSNFEKVLEVYPDNCETLKALAYIYVQLGQTDKGLEFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGSQEVPIELLNNIGVIQFERGEFELAKQTFKEALSDGIWLSFFSEANKSSIDAATSTLQFKDMQLFHDLESNGHLVEVPWDKVTVLFNLARLLEQLNESGTASMLYRLILFKYPDYIDANLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVMIQHSSNLYAANGAAVVFAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTYYEAEQWQDCIKTLQRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAGLQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCSHLLSAAKVHLEAAEREEQQTRQRQEVARQVALAEEARRKAEEQRKIQMERRKHEDELKQVQQQEEHFNRVKEQWKSSTHSKRRDRSDDEDGGTGEKKRRKGGKRRKKDKHSKSRNDTEEAEADMMDEQEVEDEDADMNSREEPQALTNDAEENPHGLLAAAGLEDSDEDDEPAGPSSTISRRRQALSESEDEEPIIRQSSPVRENSVDMQESDGEIREEKTYEDEASDEEK* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3014 1083 Coils Coil 801 821 - -
Psa1g3014 1083 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Psa1g3014 1083 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1044 IPR031101 GO:0006355|GO:0016570
Psa1g3014 1083 SUPERFAMILY TPR-like 653 740 IPR011990 GO:0005515
Psa1g3014 1083 MobiDBLite consensus disorder prediction 972 990 - -
Psa1g3014 1083 MobiDBLite consensus disorder prediction 893 949 - -
Psa1g3014 1083 Pfam Tetratricopeptide repeat 718 782 - -
Psa1g3014 1083 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Psa1g3014 1083 Gene3D Tetratricopeptide repeat domain 640 835 IPR011990 GO:0005515
Psa1g3014 1083 Gene3D Tetratricopeptide repeat domain 344 501 IPR011990 GO:0005515
Psa1g3014 1083 Pfam Tetratricopeptide repeat 354 412 - -
Psa1g3014 1083 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Psa1g3014 1083 SUPERFAMILY TPR-like 115 243 IPR011990 GO:0005515
Psa1g3014 1083 MobiDBLite consensus disorder prediction 1036 1050 - -
Psa1g3014 1083 Pfam Tetratricopeptide repeat 169 228 - -
Psa1g3014 1083 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Psa1g3014 1083 Pfam Tetratricopeptide repeat 449 476 IPR019734 GO:0005515
Psa1g3014 1083 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Psa1g3014 1083 Gene3D Tetratricopeptide repeat domain 8 341 IPR011990 GO:0005515
Psa1g3014 1083 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Psa1g3014 1083 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Psa1g3014 1083 Coils Coil 855 925 - -
Psa1g3014 1083 ProSiteProfiles TPR repeat profile. 749 782 IPR019734 GO:0005515
Psa1g3014 1083 MobiDBLite consensus disorder prediction 893 1083 - -
Psa1g3014 1083 SUPERFAMILY TPR-like 524 793 IPR011990 GO:0005515
Psa1g3014 1083 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Psa1g3014 1083 SUPERFAMILY HCP-like 203 435 - -
Psa1g3014 1083 Gene3D Tetratricopeptide repeat domain 502 631 IPR011990 GO:0005515
Psa1g3014 1083 SMART tpr_5 524 557 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 376 409 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 128 161 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 197 230 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 162 195 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 749 782 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 592 625 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 558 591 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 713 746 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 342 375 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 448 483 IPR019734 GO:0005515
Psa1g3014 1083 SMART tpr_5 305 338 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3014 Psa-Chr1 264221648 264239928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3014 K15176 - gmx:100794371 1885.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3014 1 264221648 264239928 Psa1g3014 1 264221648 264239928 ECH