Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0848 ATGAGGTCTTCTTCTTCTACTACTGCTAATTCGGGTACGATCAATATCGCTGCGAGTGCTCAGAAGCTTGATGTTGATAATCGAATTGCTCTTCGGTTCTATTATCGAATTGCTGATAACATACTTCGACAGGCTGACATCTTTCGCGCAGAGAAGAACATTATTGACCTATATGTCATGCTTTTGAGATTTTCTAGTTTGGCATCTGAGACAATACCGCGTCACCGAGAGTATAGATCATCTCCACAAACCAAGAAACAGTCATTGAAAAAGAGATTGCTGATTTCATTGAATGAACTGGAGAAGCTGAAACCATTGGCCCAGCAGAAGATCAACGAGCTTAACAGCAGAAATGCTCACCGACAAAATGGACAGGGAGATTTTCATTCAAATAATAGTGTGGATTTTTCTTCTGTGCAAAAGCAAACTTTGGCTAGTAATGGTCAAATAAAGCCTGTCAGAGCAACTGCTAGGGAATTTGCATATCAAGGATCAAGTGGCCAACATTTCTCGTATGTCAAGCCTGCAGAAGAGCAAGTGCGAAGACTATCTCTAACTCTGCCACCTCCAAAGGAGGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAATGGGCTTAATGGGCAGTGGCGGTCACCTACTATTGACACAGGGGTCAGGTATCCATCCAACATAGATCTGTCTCCAGTTGAACTTCCAAGCTTGCAACATCACTTGGAAGATGTGTCTCTGAGAAATAAAGATAATAGCATTGCAGAACTCCATAAATTAGATTTAAATTCAATTCCTACCGAGAGCGAAGACAGCCAGCCCCAGCGCACTCAGGAATCTCCTTCTCTTATATCTTTTGAAGCAATAGAAGAAACCTCTGCTCAAATAGAAATTATTAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTGCATGATTTGGTCCCTTCAATGTCACCTCACATTAATGAGGCAGGATGTAAGGCAGAGATTCCATCATCTGATAGCAGTGTTCATGCCGAGTCTCCTCTGCAATTGCACATTTCAACTGCTTTGATGGAGAGCTTTATGAATCTTGCCAAGTCAAATACTAAGAAAAATTTGGAGACTTGTGGTGTTCTTGCTGGTTTGCTTAAAAACAGAAAGTTTTATATTACTGCTCTAATAATCCCGAAGCAGGAGTCAACATCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGAAGTGCAGGATAGACGATCACTTTTCCCCCTTGGATGGATCCATACACATCCTACTCAATCTTGTTTCATGTCATCAATTGATGTGCACACTCATTACTCATATCAGATTATGCTGCCAGAATCTGTTGCAATTGTCATGGCGCCGACAGATAGTTCAAGAAAACATGGTATTTTTCGGCTGACAACCCCCGGTGGAATGTCTGTTATTAAACAGTGTGATCAACGCGGCTTTCATCCACATAATCAACCTCCAGATGGTGGCCCTATTTACGATACCTGTACAGATGTTTACATGAACCCCGATTTAAAATTCGAAGTCATCGATCTCCGGTGA 1554 0.4176 MRSSSSTTANSGTINIAASAQKLDVDNRIALRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLASETIPRHREYRSSPQTKKQSLKKRLLISLNELEKLKPLAQQKINELNSRNAHRQNGQGDFHSNNSVDFSSVQKQTLASNGQIKPVRATAREFAYQGSSGQHFSYVKPAEEQVRRLSLTLPPPKEETLSRHSILGPNGLNGQWRSPTIDTGVRYPSNIDLSPVELPSLQHHLEDVSLRNKDNSIAELHKLDLNSIPTESEDSQPQRTQESPSLISFEAIEETSAQIEIIRQPSPPPVLAEVHDLVPSMSPHINEAGCKAEIPSSDSSVHAESPLQLHISTALMESFMNLAKSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFEVQDRRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPTDSSRKHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFEVIDLR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0848 517 Gene3D - 2 133 - -
Psa1g0848 517 MobiDBLite consensus disorder prediction 263 278 - -
Psa1g0848 517 ProSiteProfiles MPN domain profile. 342 473 IPR037518 -
Psa1g0848 517 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 340 446 IPR000555 GO:0005515|GO:0008233|GO:0008237
Psa1g0848 517 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 517 - -
Psa1g0848 517 PANTHER AMSH-LIKE PROTEASE 1 517 - -
Psa1g0848 517 Gene3D Cytidine Deaminase, domain 2 325 517 - -
Psa1g0848 517 MobiDBLite consensus disorder prediction 258 278 - -
Psa1g0848 517 CDD MPN_AMSH_like 342 517 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Psa1g0848 517 SUPERFAMILY JAB1/MPN domain 342 473 - -
Psa1g0848 517 SMART pad1_6 342 470 IPR000555 GO:0005515|GO:0008233|GO:0008237
Psa1g0848 517 Pfam USP8 dimerisation domain 16 104 IPR015063 -
Psa1g0848 517 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0848 Psa-Chr1 57223673 57231418 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0848 K11866 - gmx:100804754 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0848 1 57223673 57231418 Psa1g0848 1 57223673 57231418 ECH