Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0789 ATGTCACACCGCGGTGGCAACTCCAACGCGCCGGCGGCGAAAAGTGAGCTAATCGGAAACGGCACAGTTTCCACTTTGGCGAATTCGAGGCAGAGACTGAGGTTGAATCCGAACAAGGAGCACAAGCCAGAAGCTTACGCTGATCTGGAATTGGATTTCAGTCCTTCGATTTTCAGTTCGTTAGAGAGACACCTTCCTCCGAACATGCTCGTTATTTCTCGTGATGATAAGGCTAAGTTCATGACTGAGATTTTGCTTAAGTATCTTCCCACTGGAGAGCGTAATAGAACTCAGAAGCATAAAGAATACAGGCAGAAGATAAAATCGTATTATCAGCCTTTACATCCCGAGTTGTACACTATGAATCCTATTATATTCTTTGTGCCGACATTTCTCAAAGCAATTAGTGATAATACAGAGCAAAGCTTTAGAAGCATAATATCTGAGCCCTCTCCAGACATTCTTGTATTTCAAATGTTTCAGCCAGACTTCTGTGAGTTGTTGCTATCTGAGATTGAAAATTTTGAGAAATGGGTGACTGAAGCAAATTTCCGGATCATGCGTCCCAATAGAATGAATAAATTTGGTGCCGTGCTTGATGACTTTGGGCTTGAGCCGATGCTTGACAAGCTTATGGATGATTTTGTCCGTCCTTTATCTAGAGTCTTCTTTCCAGAAGTTGGAGGATCAACCCTGGATTCGCATCATGGATTTGTTGTAGAGTATGGTAAAGATAAAGATGTTGACTTAGGTTTCCATGTGGATGACTCGGAAGTAACCTTGAATGTTTGCTTGGGTAAGGAATTTTCCGGAGGGGAGTTGTTTTTTCGAGGCTCAAGATGTGAGAAACATGTAAATACAGGAAGTCAGCCAGATGAAGTCTTTGATTATAATCATGTCCCGGGACGGGCTGTGCTCCATCGTGGTCGACATCGTCATGGTGCTAGAGCAACAACATCTGGCCATCGGATCAACTTCCTGATGTGGTGCAGAAGTTCTGTCTTTAGAGAGATGAAACTGTATCAAAAAGATTTCTCCAGCTGGTGCGGAGAATGCAATCGAATGAAACAGGAAAGACAGCACTCCACATGTGCTGCTACAAGATTGGAACTGATCACACGGGAAGGTGAATCCGCCGCATAG 1143 0.4374 MSHRGGNSNAPAAKSELIGNGTVSTLANSRQRLRLNPNKEHKPEAYADLELDFSPSIFSSLERHLPPNMLVISRDDKAKFMTEILLKYLPTGERNRTQKHKEYRQKIKSYYQPLHPELYTMNPIIFFVPTFLKAISDNTEQSFRSIISEPSPDILVFQMFQPDFCELLLSEIENFEKWVTEANFRIMRPNRMNKFGAVLDDFGLEPMLDKLMDDFVRPLSRVFFPEVGGSTLDSHHGFVVEYGKDKDVDLGFHVDDSEVTLNVCLGKEFSGGELFFRGSRCEKHVNTGSQPDEVFDYNHVPGRAVLHRGRHRHGARATTSGHRINFLMWCRSSVFREMKLYQKDFSSWCGECNRMKQERQHSTCAATRLELITREGESAA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0789 380 MobiDBLite consensus disorder prediction 1 41 - -
Psa1g0789 380 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 19 379 - -
Psa1g0789 380 SMART p4hc 152 331 IPR006620 GO:0005506|GO:0016705|GO:0031418
Psa1g0789 380 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 19 379 - -
Psa1g0789 380 Gene3D q2cbj1_9rhob like domain 151 332 - -
Psa1g0789 380 MobiDBLite consensus disorder prediction 1 33 - -
Psa1g0789 380 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 233 332 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0789 Psa-Chr1 50695178 50700508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0789 - - gmx:100812049 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0789 1 50695178 50700508 Psa7g0131 7 9233409 9239444 ECH
Psa1g0789 1 50695178 50700508 Psa1g0789 1 50695178 50700508 ECH
Psa7g0131 7 9233409 9239444 Psa1g0789 1 50695178 50700508 PCT