Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0660 ATGGCGTCGCTGCTTCTACCCACACCTCCTCCTCTCACCTCATTCTACCACCGCAGCACCTTATCATCATCATCATCATCATCATCATCATCGTCATCATCATCGCTTCAATTTCACCCTCGCTTCTCTTTTTCTTCTTTCCCATCTCTTTCCCAAACTCCTACGAAAAGAAGCATTTCCCTTCGCACTTTCGCTTTCGACTCCTCTGACTCCAAAGTTCAACAACCAGAACAAAAAGAAGGTGCTATTGACGGTGAAAATGTTAGAATTTCCGATGAGGATTATCCTAGTGGCGACTTCGAATTTCAACCTATTACTGGCTGGAGGAACTTTCTCGTCAAGGTTAAGATGTTGATTGCGTTTCCATGGGAACGTGTTCGTAAAGGTAGCGTTCTCACAATGAAGCTGCGTGGCGAGATATCTGATCAAGCGAAGAGTAGTTTCTCTCCGGGACTTTCTCTACCCCAAATTTGTGAGAATTTTTTGAAAGCAGCCTATGATCCTCGAATTTCTGGCGTCTATCTCCATATTGATGGTTTAAGATGTGGGTGGGGTAAAGTGGAAGAAATTCGAAGGCACATTTTGAATTTCAAAAAATCAGGAAAATTTGTTGTAGCTTATGTCCCTACATGTCAAGAAAAAGAATATTACCTTGCATGTGCATGTGAAGAGATATATGCACCTCCAAGTGCTTACTTTTCTTTGTTTGGATTGAGTGTTCAAGCTTCATTCCTTAGAGGTGTTTTAGATAACATAGGAATTGAACCACAAGTGGAGAGGATTGGCAAGTACAAAAGTGCAGGAGATCAATTAGCTCGAAGGACCATGACTGATGAAAATTGTGAGATGCTGACTGCATTGCTTGATAACATCTATGCAAACTGGCTGGATAAAGTCTCTTCTGCCAAAGGAAAGGGAAGAAAAGATATTGAGAACTTCATAAATGAAGGTGTTTACCAAGTTGATAAGCTGAAAGAAGAGGGCCTTATATCAAATGTGATGTATGATGATGAGGTTACTGCCATGTTGAAGGAGAGACTTGGAGTGAAAGCTAAAAAAGATCTACCCACAGTAGATTACAGGAGATACTCTCGTGTTAGAAAATCGACAGTTGGAATATCAGGTGGCAAAGAATTGATAGCCATCATACGGGCATCAGGGAGCATTAGTCGAGTTAAGGGCCAATTTAGTTTCTCTAGATCTGGCATAGTTGCAGAGGAGTTCATTGAGAAGATTCGCACTGTCAGAAAGTCAAAACAATATAAGGCCGCTATTATCAGAATTGATAGTCCTGGAGGTGACGCTCTTGCCTCTGATTTGATGTGGAGAGAAATTCGGCTTTTAGCTGCTTCAAAACCTGTCATTGCTTCAATGTCTGATGTAGCAGCTAGTGGAGGATACTACATGGCAATGGGAACTGATGCTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTAACAGGAAAATTTAACCTAGGGAAACTCTATGAGAAGATTGGCTTTACAAAAGAAATCATATCCAGGGGAAGATATGCTGAACTTGTTGCTGCTGATCAACGTTCTTTTAGACCAGATGAAGCAGAGCTATTTGCAAAATCTGCCCAGAATGCTTATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCAATGACTGTTGATAAGATGGAGGAGGTAGCACAGGGGAGGGTTTGGACCGGTAAGGATGCGGCATCGCATGGTTTGGTTGATGCTATTGGTGGCCTTTCCCGAGCCATTGCCATAGCAAAATTGAAGGCCAATATACCTCAAGAAAAAGAGGTTACTGTTGTGGAATTATCCAGATCAAATCCCTCTCTACCTGAGATTTTATTAGGCGCAGGGAGTTCCCTAACTGGTGTTGAAACCACGTTGAAGGAACTGCTACAAGGTTTAACATTTTCAGATGGAGTTCAAGCAAGGATGGATGGAATCATATTTCGTTCATTGGAAGGATTTCCAAACTCCAACCCCATTTTGTCAATTATAATAGATTATCTTAGTTCTTTGTAG 2043 0.4141 MASLLLPTPPPLTSFYHRSTLSSSSSSSSSSSSSSLQFHPRFSFSSFPSLSQTPTKRSISLRTFAFDSSDSKVQQPEQKEGAIDGENVRISDEDYPSGDFEFQPITGWRNFLVKVKMLIAFPWERVRKGSVLTMKLRGEISDQAKSSFSPGLSLPQICENFLKAAYDPRISGVYLHIDGLRCGWGKVEEIRRHILNFKKSGKFVVAYVPTCQEKEYYLACACEEIYAPPSAYFSLFGLSVQASFLRGVLDNIGIEPQVERIGKYKSAGDQLARRTMTDENCEMLTALLDNIYANWLDKVSSAKGKGRKDIENFINEGVYQVDKLKEEGLISNVMYDDEVTAMLKERLGVKAKKDLPTVDYRRYSRVRKSTVGISGGKELIAIIRASGSISRVKGQFSFSRSGIVAEEFIEKIRTVRKSKQYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGTDAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFTKEIISRGRYAELVAADQRSFRPDEAELFAKSAQNAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQEKEVTVVELSRSNPSLPEILLGAGSSLTGVETTLKELLQGLTFSDGVQARMDGIIFRSLEGFPNSNPILSIIIDYLSSL* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0660 680 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 380 593 IPR004635 GO:0006508|GO:0008233
Psa1g0660 680 Gene3D - 129 365 - -
Psa1g0660 680 MobiDBLite consensus disorder prediction 69 88 - -
Psa1g0660 680 MobiDBLite consensus disorder prediction 73 88 - -
Psa1g0660 680 PANTHER PROTEASE 4 58 679 - -
Psa1g0660 680 Gene3D - 524 646 - -
Psa1g0660 680 Pfam Peptidase family S49 197 349 IPR002142 GO:0006508|GO:0008233
Psa1g0660 680 Pfam Peptidase family S49 448 598 IPR002142 GO:0006508|GO:0008233
Psa1g0660 680 SUPERFAMILY ClpP/crotonase 380 585 IPR029045 -
Psa1g0660 680 SUPERFAMILY ClpP/crotonase 121 338 IPR029045 -
Psa1g0660 680 CDD S49_SppA_67K_type 132 345 - -
Psa1g0660 680 PIRSF Protease_4_SppA 62 679 IPR004634 GO:0006465|GO:0008233|GO:0016021
Psa1g0660 680 Gene3D - 375 523 - -
Psa1g0660 680 CDD S49_Sppa_N_C 380 594 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0660 Psa-Chr1 41186114 41197873 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0660 K04773 - gmx:100781522 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0660 1 41186114 41197873 Psa1g0660 1 41186114 41197873 ECH