Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0642 ATGGGTTGGATTTCAGACACAGTTGAGTCTGTCAAATCCATTAAATTTAGAGAAGCTTCGACCCAACTCATCACTCTCGGGTTGGTTGTAACATCTGCGCTAGTTATATGGAAAGGGTTAATGTGTATCACTGGAACTAAATCCCCCGTTGTCGTTGTTCTTTCTGAAAGCATGGAACCTGGTTTTCAAAGAGGTGACATTCTGTTCTTGCACATGAATAATGATCCTATTCGTGCCGGAGACATTGTGGTTATCAATATAGATGGACGTGATATTCCAATTGTTCACCGTGTAATTAAGGTCCATGAGCGTCAAGATACACAAGAGACTTATTACCTTACTAAAGGAGACAATAATGACATGGATGACAGGGTTTTGTATAATCATGGCCAGGATTGGTTGGAGAAAAAGCATATTATGGGAAAAGCTGCCGGGTTTTTACCTTATGCTGGTTGGGCTACACTAATTATGTCCCAAAAACCCATTGTCAAGTATATACTAGCGGGGGCATTTGGACTACTGGTTTTGATATCAAAGGAATAG 543 0.4052 MGWISDTVESVKSIKFREASTQLITLGLVVTSALVIWKGLMCITGTKSPVVVVLSESMEPGFQRGDILFLHMNNDPIRAGDIVVINIDGRDIPIVHRVIKVHERQDTQETYYLTKGDNNDMDDRVLYNHGQDWLEKKHIMGKAAGFLPYAGWATLIMSQKPIVKYILAGAFGLLVLISKE* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0642 180 CDD S26_SPase_I 49 143 IPR019533 GO:0004252|GO:0006465
Psa1g0642 180 Gene3D Umud Fragment, subunit A 39 148 - -
Psa1g0642 180 PANTHER SIGNAL PEPTIDASE I 1 179 - -
Psa1g0642 180 PRINTS Eukaryotic signal peptidase (S26B) family signature 53 68 IPR001733 GO:0006465|GO:0008233|GO:0016020
Psa1g0642 180 PRINTS Eukaryotic signal peptidase (S26B) family signature 112 123 IPR001733 GO:0006465|GO:0008233|GO:0016020
Psa1g0642 180 Pfam Peptidase S24-like 37 142 IPR015927 -
Psa1g0642 180 SUPERFAMILY LexA/Signal peptidase 35 144 IPR036286 -
Psa1g0642 180 TIGRFAM sigpep_I_arch: signal peptidase I 26 176 IPR001733 GO:0006465|GO:0008233|GO:0016020
Psa1g0642 180 PANTHER SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 1 179 IPR001733 GO:0006465|GO:0008233|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0642 Psa-Chr1 39822881 39825274 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0642 K13280 - fve:101302099 281.567