Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0454 ATGGCTTGCATGAAATTGGGTTCCAAACCTGATGCATTCCAGCGGCAAGGACAAGCATGGTTCTGCACGACCGGGCTTCCCAGCGATATAGTTGTTGAAGTTGGCGAGATGTCTTTCCATCTTCACAAGTTCCCTTTGCTCTCAAGAAGTGGGGTTTTGGAAAGATTGATTGCCAAAGCTTCTGAATCAGAGGAAGAATGTGGCATACCCCTTCACGACATTCCCGGCGGGGCCAAAACATTTGAACTTGTAGCAAAATTCTGCTACGGCGTGAAACTTGAACTTACGGCGTCAAATGTTGTGAGCCTATGGTGTGCTGCCGAGCATCTTGAAATGACTGAGGAATACGGTGAAGGTAATCTTATTTCGCAAGCGGAAGGCTTTTTCAATCAAGTGGTCCTCCGAAGTTGGAAAGACTCCATGAGGGCACTTCAAACCTGTGGCGATGTTCTGTCCAAAGCCGAAGAACTCCACATTGTGAAAAGGTGCATTGAATCACTTGCAGCAAAGGCATCTACTGACCCAAATTTATTTGGGTGGCCGGTACTAGAGCGTGGTGGTCCCTTGCAGAGTCCTGGTGGAAGTGTTTTATGGAATGGAATAAGTACCGGGGCAAGACCAAAGAATACAAGTTTAGATTGGTGGTATGAGGATGTTGCAAATCTGAGTTTACCGATTTATAAGAGGCTGATAGCTGTCATGGAATCTCGGGGCATTAGGCAGGAAATTATTGCTGGTTCTCATGCTTTCTATGCGAAAACGTATTTGCCTGGTTTAAATCGACGTAAGGTTTCCGGCGAGTCCAGTACCCGGTTAAACCCGGCGGCTTTAGGGTCTCCATTATCTGAAGAAGATCAAAAGATTCTTATAGAAGAAATCGATCAACTACTTCCAATGCAGAAGGGCTTGGTCCAAACAAAGTTCCTGTTCGGTCTACTTCGAACTGCCATGATTCTAAGAGTGAGCTTGTCTTGCATATCAAGTTTGGAGAAACGGATCGGGATGCAGCTTGATCAAGCTGCTTTGGAAGATCTCTTGATGCCAAGTTTTTCGTATTCAATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTTGATCATTTCCTTGCAATGGATCAGGTTACAGGCGGTGCCTCTCCATGCTCAATCGACGACGATGGCCAGTTGATTGGTTCACCGTCACTGACACCGATCACTATGGTAGCAAAACTGATTGATGGATACCTGGCCGAGGTTGCTCCAGATGTTAATGTAAAACTTCCCAAGTTTCAAACCCTTGCTGCCGCTGTTCCAGAGTATGCCAGGCCTTTGGATGATGGTTTATATCGTGCTATAGATATTTATTTGAAGTCTCATCCATGGTTGGTGGAGTCGGAGAGAGAGGAGTTATGCAGGCTAATGGACTGCCAGAAGCTCTCACTAGAAGCATGCACCCACGCCGCACAAAACGAGAGGCTACCGATTAGAATCATAGTTCAAGTTCTATTTTTCGAGCAGCTCCAGCTTCGAACATCAATCGCCGGTTGCTTTCTAGTTTCAGACAATCTCGACGGATCAAGAAATTTAAGAAGTGGTTTAGTTGGATCCAACGAGGGTGGTGGATGGGCATCCGCCGTAAAGGAAAACCAGGTACTGAAAGTCGGGATGGATAACATGAGAATGAGGGTATCCGAGCTTGAGAAAGAGTGCTCAAACATGAGGCAAGAGATCGAGAAGCTCGGTGGTAAGGCAAAAGGGTCGTCAACAAGTGCTTGGGGAGCCGTGTCGAAGAAACTTGGGTTTAAGATAAAGTCTCAGATGTGTAGTGCTCAAGAAGGATCTGTTAGCAAACAGAACATTGGAAATAATAAGGTTGAGAAGTTGAAGGATAGACATGTAAAGCATAATAGAAATTCTTCTATTAGTGACAAAGGATCAGTTTCTTCGACTGTTCCTTCTTAG 1947 0.453 MACMKLGSKPDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVLERLIAKASESEEECGIPLHDIPGGAKTFELVAKFCYGVKLELTASNVVSLWCAAEHLEMTEEYGEGNLISQAEGFFNQVVLRSWKDSMRALQTCGDVLSKAEELHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNTSLDWWYEDVANLSLPIYKRLIAVMESRGIRQEIIAGSHAFYAKTYLPGLNRRKVSGESSTRLNPAALGSPLSEEDQKILIEEIDQLLPMQKGLVQTKFLFGLLRTAMILRVSLSCISSLEKRIGMQLDQAALEDLLMPSFSYSMETLYNVDCVQRILDHFLAMDQVTGGASPCSIDDDGQLIGSPSLTPITMVAKLIDGYLAEVAPDVNVKLPKFQTLAAAVPEYARPLDDGLYRAIDIYLKSHPWLVESEREELCRLMDCQKLSLEACTHAAQNERLPIRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRNLRSGLVGSNEGGGWASAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKLGGKAKGSSTSAWGAVSKKLGFKIKSQMCSAQEGSVSKQNIGNNKVEKLKDRHVKHNRNSSISDKGSVSSTVPS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0454 648 CDD BTB_POZ_NPY3-like 19 122 - -
Psa1g0454 648 PANTHER - 1 622 - -
Psa1g0454 648 Pfam NPH3 family 213 479 IPR027356 -
Psa1g0454 648 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Psa1g0454 648 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Psa1g0454 648 MobiDBLite consensus disorder prediction 606 648 - -
Psa1g0454 648 Coils Coil 544 578 - -
Psa1g0454 648 PANTHER OS12G0117600 PROTEIN 1 622 IPR043454 -
Psa1g0454 648 MobiDBLite consensus disorder prediction 618 634 - -
Psa1g0454 648 SMART BTB_4 28 121 IPR000210 GO:0005515
Psa1g0454 648 Gene3D Potassium Channel Kv1.1; Chain A 15 116 IPR011333 -
Psa1g0454 648 SUPERFAMILY POZ domain 16 114 IPR011333 -
Psa1g0454 648 ProSiteProfiles NPH3 domain profile. 213 503 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0454 Psa-Chr1 27647428 27651411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0454 8 574 EF-hand Containing Proteins AT3G44820 48.376 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0454 - - gmx:100794676 1143.26