Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0399 ATGAATATCAAGTATCTGCTGGTTCTTATGTGTCTTTGGATTTGGTCTATACCTATGGTTTTTACAATTTCTGATGATGGATTGATGAGAGTTACTCTAAAAAAGAGAAACTTGGACTCTGACAGTCTTAATTATGCAAGAATCAAAGAGGCAATTCATCTCAGAGATTTAAAGAGTGTTGATAAAAATTATTCCCAAAAAGATGTTGTTGTGTATATTAAGAATTACTTTGATGTACAATATTTTGGGGAAATTGGTATTGGTTCACCACCACAGTACTTCAATGTTGTTTTTGACACTGGTAGCTCCAATCTTTGGGTTCCTTCTTCCAAATGCATATTCTCAATTGCTTGCTATTTTCATTCCAAATATAGGTCAAAGATATCTAGCACATATAAAGAAATTGGAATACCTTGTGAGATTCCTTATGATGAAGGGTACATTGATGGATTCTTCAGCCAAGACAATGTAAAAGTTGGGGATATCATAATCAAGGATCAAGAATTTTCTGAGATTACAAGGGAAGGAAATTTTGCACTCTTAGCTCTTCCATTTGATGGTATACTTGGACTTGGATTCCAGGATATTTCAGTTGGAAGAGTCACACCAGTGTGGTATAATATGATAGAACAAGGACTGATGTTGGACAAAGTTTTCTCTCTTTGGCTAAATAAAGATCCATTGGCACAGATTGGGGGTGAGATTATCTTTGGTGGTGTGGACAAGAGGCATTTTAAAGGTGACCACACTTACTTTCCAATTTCTCAAAAGGGTTATTGGCAGATTGAAGTGGGAGATATTCTACTTGCCAATAATTCAACAGGTTTATGCGAGGGTGGATGTGCTGCAATAGTGGATTCCGGAACATCTTTAATTGCTGGTCCAACTGGTGTTGTGACTCAAATTAACCACGCCATTGGAACAGAAGGATATGTTAGTTTTGAGTGTAAAAACATTGTCCATAACTACGGAAATTTGATATGGGAATCCTTGATTTCAGGATTAAATCCTGAAATCTTATGCGTGGACATTGGACTCTGTTCAAATAATGAACTTCAAAGTTCGAACAATGTTATCGAAACAGTGGTGCATAATGAAAGTCGGGATGGATCGCAAATAGACGAGAGCCCCTTTTGTAGTTTTTGCAATATGATTGTCCTTTGGATTCAAGTTCAGATTAGACAAAGCAACGTAAAGGAAAAAGTATTAAAACACGTGGACGAGCTATGCGAGAGGCTCCCGAATCCGGTTGGACAATCATTTATAAACTGCAGCAGTGTCTCAGATATGCCACACATTACATTCACAATTGGAAGCAAATTGTTTCCTCTCTCTCCAGAACAGTATATTCTAAAAGTTGATGATGATGATAAAGATTGTTCTCCTGTGTGCTATAGTGGTTTTGTTGCACTAGATGTGCCTTCCCCACAGGGTCCCCTATGGGTTTTTGGAGACATTTTCTTGCAGGCATATCACACAGTGTTTGATTATGGTAATGTCCGTATAGGATTTGCAGAATCTGTATAG 1527 0.3746 MNIKYLLVLMCLWIWSIPMVFTISDDGLMRVTLKKRNLDSDSLNYARIKEAIHLRDLKSVDKNYSQKDVVVYIKNYFDVQYFGEIGIGSPPQYFNVVFDTGSSNLWVPSSKCIFSIACYFHSKYRSKISSTYKEIGIPCEIPYDEGYIDGFFSQDNVKVGDIIIKDQEFSEITREGNFALLALPFDGILGLGFQDISVGRVTPVWYNMIEQGLMLDKVFSLWLNKDPLAQIGGEIIFGGVDKRHFKGDHTYFPISQKGYWQIEVGDILLANNSTGLCEGGCAAIVDSGTSLIAGPTGVVTQINHAIGTEGYVSFECKNIVHNYGNLIWESLISGLNPEILCVDIGLCSNNELQSSNNVIETVVHNESRDGSQIDESPFCSFCNMIVLWIQVQIRQSNVKEKVLKHVDELCERLPNPVGQSFINCSSVSDMPHITFTIGSKLFPLSPEQYILKVDDDDKDCSPVCYSGFVALDVPSPQGPLWVFGDIFLQAYHTVFDYGNVRIGFAESV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0399 508 SUPERFAMILY Saposin 313 414 IPR011001 -
Psa1g0399 508 ProSiteProfiles Saposin B type domain profile. 311 351 IPR008139 -
Psa1g0399 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 96 107 IPR001969 GO:0004190|GO:0006508
Psa1g0399 508 Gene3D Acid Proteases 240 507 IPR021109 -
Psa1g0399 508 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Psa1g0399 508 PRINTS Pepsin (A1) aspartic protease family signature 233 246 IPR001461 GO:0004190|GO:0006508
Psa1g0399 508 PRINTS Pepsin (A1) aspartic protease family signature 283 294 IPR001461 GO:0004190|GO:0006508
Psa1g0399 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Psa1g0399 508 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 5 507 - -
Psa1g0399 508 SUPERFAMILY Acid proteases 9 506 IPR021109 -
Psa1g0399 508 Pfam Eukaryotic aspartyl protease 80 506 IPR033121 -
Psa1g0399 508 ProSiteProfiles Saposin B type domain profile. 375 416 IPR008139 -
Psa1g0399 508 Gene3D - 311 414 - -
Psa1g0399 508 Pfam Saposin-like type B, region 2 315 347 IPR008138 -
Psa1g0399 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 5 507 IPR001461 GO:0004190|GO:0006508
Psa1g0399 508 ProSiteProfiles Peptidase family A1 domain profile. 81 505 IPR033121 -
Psa1g0399 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 283 294 IPR001969 GO:0004190|GO:0006508
Psa1g0399 508 Gene3D Acid Proteases 29 239 IPR021109 -
Psa1g0399 508 Pfam Saposin-like type B, region 1 377 414 IPR007856 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0399 Psa-Chr1 24893730 24897239 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0399 K08245 - gmx:100500551 795.423