Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0186 ATGAACCAAACAGCCCTTTCACCACCAAACCACTGGCACCCCACAAATCAACCAAACCTAAACCCTTTCACCGCTTCACCCACCACCTTCAATCAAATCCAATTCCTTCGATTCAACAACCAAAACGACAAACAAAACCTCCCAATCTTGCGTTCCGCCACAAACCCTTCATCCCACCTCCCACCGGTCGTCGTCGTAGGCTCCGCCAATGCTGACATCTACGTCGAGATCGACCGACTCCCAAAGGAAGGCGAAACAATCTCGGCAAAAACCGGTCAAACTCTAGCCGGCGGGAAAGGCGCTAACCAAGCTTGCTGCGGTGCTAAACTGTCACATCCGACTTACTTCGTTGGTCAGGTCGGGAATGACGCTCACGGAAACCTCGTCGCCGATGCTCTTCGTGAGGGTGGTGTTCGTTTAGATTATCTAGCTGTTGTGCCGTCTGCTCCGACTGGACATGCCGTTGTTATGCTTCAGGATAGTGGACAGAATTCCATTGTTATTGTTGGTGGTGCTAATGTGAGTTTTTGGCCTCAGAGTTTGCAGCTTCGGCATTTGGAGGTTGTTTCTTCCGCTGGGATTGTTCTGTTGCAGAGGGAGATTCCTGATTTTGTTAATGTTCAAGTGGCAAAGGCTGCAAGGAATGCTGGTGTCCCGGTAATATTTGATGCTGGGGGAGTGGATGCACCAATTCCACAAGAATTACTGGATTTTGTTGATATTTTTAGTCCTAATGAAAGTGAACTTGGTCGCCTTACAGGATTACCGACTGAAAGTTTTGAAGAGATTACACAAGCTGCTGCGAAATGCCATAAACTGGGTGTTAAGCAAGTTCTTGTGAAACTTGGTGCCAAAGGATCTGCCCTTTTCATAGAAGGAGAAGAACCAATTCAACAACCAGCCATTTTTGCTAAAACAGTCATTGATACAACCGGAGCTGGCGATACTTTTACTGCTGCTTTTTCTGTAGCGTTAGTGGAGGGAAAGTCCAAAAAGGAATGCCTCAGATTTGCCGCTGCTGCAGCTTCTCTTTGTGTTCAAGTCAAGGGAGCAATTCCCAGCATGCCTGATAGAGAGTCTGTTCTCGAACTTCTTAATCACCATTGA 1107 0.4734 MNQTALSPPNHWHPTNQPNLNPFTASPTTFNQIQFLRFNNQNDKQNLPILRSATNPSSHLPPVVVVGSANADIYVEIDRLPKEGETISAKTGQTLAGGKGANQACCGAKLSHPTYFVGQVGNDAHGNLVADALREGGVRLDYLAVVPSAPTGHAVVMLQDSGQNSIVIVGGANVSFWPQSLQLRHLEVVSSAGIVLLQREIPDFVNVQVAKAARNAGVPVIFDAGGVDAPIPQELLDFVDIFSPNESELGRLTGLPTESFEEITQAAAKCHKLGVKQVLVKLGAKGSALFIEGEEPIQQPAIFAKTVIDTTGAGDTFTAAFSVALVEGKSKKECLRFAAAAASLCVQVKGAIPSMPDRESVLELLNHH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0186 368 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 309 322 IPR002173 GO:0016773
Psa1g0186 368 PRINTS Ribokinase signature 65 86 IPR002139 GO:0016301
Psa1g0186 368 PRINTS Ribokinase signature 92 111 IPR002139 GO:0016301
Psa1g0186 368 PRINTS Ribokinase signature 164 177 IPR002139 GO:0016301
Psa1g0186 368 PRINTS Ribokinase signature 234 249 IPR002139 GO:0016301
Psa1g0186 368 PRINTS Ribokinase signature 278 289 IPR002139 GO:0016301
Psa1g0186 368 SUPERFAMILY Ribokinase-like 62 365 IPR029056 -
Psa1g0186 368 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 97 121 IPR002173 GO:0016773
Psa1g0186 368 PANTHER SUGAR KINASE 61 368 - -
Psa1g0186 368 CDD ribokinase 62 357 IPR011877 GO:0004747|GO:0006014
Psa1g0186 368 Pfam pfkB family carbohydrate kinase 63 357 IPR011611 -
Psa1g0186 368 Gene3D - 60 367 IPR029056 -
Psa1g0186 368 Hamap Ribokinase [rbsK]. 61 363 IPR011877 GO:0004747|GO:0006014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0186 Psa-Chr1 10936328 10939620 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0186 K00852 - gmx:102666284 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0186 1 10936328 10939620 Psa1g0186 1 10936328 10939620 ECH