Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0163 ATGTTATTAATATCTTCAATATTGATTTCATACACAAGCGCGTGTATATATACAACAAAGAAAGTGCAGACTTCAAATCTAAATCTGCGTAGATTTCGTCTTCACTTCCTACTTTCTCTCAACTCACGTCTTCTTCTTTTCTTCTTCATTTACCAATTTAGGTTGCTTGATATGACTACTCATACCCCGAAAAATATCTTGATTACCGGGGCAGCTGGATTCATTGCATCCCATGTTGCCAACCGGCTTATCCGGAACTATCCCGACTACAAAATTGTTGTTCTCGACAAACTCGATTACTGTTCGAATCTGAAGAATCTAATTCCTTCAAAATCGTCCCCTAACTTTAAGTTCGTGAAGGGGGACATTGCAAGTGCTGACCTTGTTAACTACCTTCTCATCACTGAGGCGATCGACACGATTATGCACTTTGCTGCTCAGACTCATGTTGACAACTCTTTTGGTAATAGTTTTGAGTTTACCAAGAACAACATATATGGTACTCATGTCTTATTAGAAGCCTGCAAGGTAACTGGACAGATCAAAAGATTCATCCATGTAAGCACTGATGAGGTCTATGGAGAGACCGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGCTACTTCCGACGAATCCGTACTCTGCAACAAAAGCTGGGGCGGAAATGCTCGTCATGGCGTATGGTAGGTCGTATGGATTACCAGTGATCACAACACGTGGAAACAATGTCTACGGCCCAAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTCTTGGCATTACAAGGCAAAGTTCTTCCGATTCACGGGGATGGTTCGAATGTAAGGAGTTATTTGTATTGTGAAGATGTTGCTGAAGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGACATGTTTACAATATTGGGACTAAGAAGGAACGGAGAGTTATCGATGTAGCCACCGATTTATGCAGACTCTTCTCGAAGGATCCAGAGACTAGTATAAAATTTGTAGAGAACAGACCGTTTAATGATCAGAGATACTTTCTTGATGATCAAAAGCTGAAGAATTTGGGTTGGTCGGAGAGAACTACTTGGGAAGAAGGCTTGAAGAAAACCATGGATTGGTACATCAAAAATCCCGATTGGTGGGGTGATGTGAGTGGTGCATTGCTTCCTCATCCGATGTTGGTGATGCCAGGTGGTATGGAGAGACATTTCAATGCATCTGCAGACGAAAATTCGGCATCATATGTCTCAAATACGAATACTCGAATGTTGGTTCCGACCACCAAGAACGTTGGCTCCTCGCAAAAACATCCTCTCAAATTCTTGATCTATGGAAGGACAGGTTGGATTGGTGGTTTACTCGGGAAATTGTGTGAGAAACAAGGGATTCCTTATGAGTATGGAAAAGGGCGCCTTGAGGATCGCTCATCACTCGTGGCTGATATTCAAAATGTGAAGCCGAGTCATATTTTCAATGCAGCAGGAGTTACCGGAAGACCTAATGTTGATTGGTGTGAATCTCATAAAACAGAAACAATCCGCGTCAACGTTGCTGGTACTTTAACATTGGCCGATGTCAGCAGAGAGCATAACCTTTTGATGATAAACTATGCTACCGGGTGCATATTCGAGTACGATGAAGCTCATCCAGAAGGTTCAGGCATTGGTTTTAAGGAGGAAGACACGCCTAATTTCACCGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTCTTGAAAGAATATGACAATGTATGCACTCTCAGAGTCCGCATGCCGATTTCATCCGACTTAAGCAATCCACGCAATTTCATTACCAAGATTTCGCGTTACAACAAAGTCGTCAACATTCCAAACAGCATGACAATTTTGGATGAACTTCTTCCTATTTCAATTGAGATGGCTAAGAGGAACCTAAGAGGCATCTGGAACTTCACAAATCCTGGCGCCGTGAGCCACAACGAGATTCTCGAGATGTACAGGGATTACATCGATCCAAATTTCAAGTGGTTTAACTTCACACTTGAAGAACAAGCCAAGGTGATAGTTGCTGCCAGAAGCAACAATGAAATGGATGCATCCAAATTGAAGAATGAGTTTCCAGAATTGCTTTCCATCAAAGAATCACTTATCAAGTATGTGTTTGAGCCAAACAAGAAAAGTGCCTAA 2181 0.42 MLLISSILISYTSACIYTTKKVQTSNLNLRRFRLHFLLSLNSRLLLFFFIYQFRLLDMTTHTPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIASADLVNYLLITEAIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLALQGKVLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVATDLCRLFSKDPETSIKFVENRPFNDQRYFLDDQKLKNLGWSERTTWEEGLKKTMDWYIKNPDWWGDVSGALLPHPMLVMPGGMERHFNASADENSASYVSNTNTRMLVPTTKNVGSSQKHPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPSHIFNAAGVTGRPNVDWCESHKTETIRVNVAGTLTLADVSREHNLLMINYATGCIFEYDEAHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWFNFTLEEQAKVIVAARSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKSA* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0163 726 Pfam GDP-mannose 4,6 dehydratase 67 372 IPR016040 -
Psa1g0163 726 Gene3D - 431 726 - -
Psa1g0163 726 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 434 714 IPR036291 -
Psa1g0163 726 Gene3D - 257 379 - -
Psa1g0163 726 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 60 723 - -
Psa1g0163 726 CDD dTDP_GD_SDR_e 64 381 IPR005888 GO:0008460|GO:0009225
Psa1g0163 726 Gene3D - 66 370 - -
Psa1g0163 726 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 389 IPR036291 -
Psa1g0163 726 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 65 385 IPR005888 GO:0008460|GO:0009225
Psa1g0163 726 Pfam RmlD substrate binding domain 442 612 IPR029903 -
Psa1g0163 726 PANTHER BNAC05G13120D PROTEIN 60 723 - -
Psa1g0163 726 CDD dTDP_HR_like_SDR_e 442 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0163 Psa-Chr1 10295325 10298894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0163 65 377 Miscellaneous Gene Families AT4G00110 27.761 4.31e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0163 K12450 - gmx:100789909 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0163 1 10295325 10298894 Psa1g0163 1 10295325 10298894 ECH