Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci9g1703 | ATGCTGAAGCTTCGGAGCCCATTCTATCTTCTTCACACGCTAAAGCAACGATTTTTACCCCCTTATCACTCTCTCGGCACCATAATTCAGCCATCACCGTCCACGCCGCAGCTGGTGGCGGAGGACTTTGCACTTGCCAAACTCATTCTCGAATCAGATACGCAATCTCTGTCTGAAACCCTACAAAGAACAACTTTCCAATGGAATCCAGACCTGGTGGATAAGGTCCTCAAACGCCTATGGAACCATGGACCCAAAGCGCTGCTATTTTTCAAGTGCCTTGAACACCACCCGACCTATACTCATGCCTCGTCATCCTTTGATTACGCCATTGACATTGCCGCTCGTATGCGTGACTACAAGTCTGTTTGGACTCTGGTTGCTCGTATGCGAGCTCGCCGTGTCGGACCAAGCCCTCGAACTTTCGCGATCATTACTGAGAGGTATGTCGCTGCTGGTAAAGCTGATAGAGCTGTAAAGATTTTTTTGTCAATGCACAAACATGGTTGTCGTCAGGATTTGAGTTCTTTTAATACGATCCTTGATGTGTTGTGCAAGTCCAGACGAGCAGAGATGGCTTATAATTTGTTCAAAGTTTTCAGAGGTAGATTTAGGGCTGATAGTATCAGTTATAACATAATTGCTAATGGCTGGTGCTTGATTAAGCGAACGCCCAAGGCTTTGGAGGTGATGAAGGAGATGGTAGAAAGGGGATTGACTCCAACTTTAACTACGTATAATATATTGCTTAAAGGGTATTTCAGGACTGGTCAGCTGACGGAAGCTTGGGATTTCTTTTTGGAAATGAAGAAGAGGAAATGCGATATTGATGTTGTGACCTATACTACCATGGTTCATGGGTTTGGTGTTGTGGGTGAAATTCAAAAGGCTAGAAAGGTTTTTGATGAGATGATTAGGGAGGGTGTTCTTCCTTCAGTAGCAACATACAATGCTTTGATTCAAGTTTTATGCAAGAAGGATAGTGTAGAAAATGCTATATTGGTCTTCGAAGAGATGGTGAGAAAGGGTTACGTGCCTAATTCAGTTACTTACAATGTAATCATTAGAGGGTTGTGTCATACAGGTGACATGCAGAGAGCCATGGAGTTTATGGTGAGAATGGAGGAAGATGATTGTCAGCCGAATGTTCAGACATATAATGTCATGATACGATACTTCTGTGATGCTGGGGAGATCGAGAAGGGTTTAGACATGTTAGAGAAGATGAGGAACAGGTCATGCTTGCCCAATCTAGACACGTATAACATTCTGATCAGTGACTTGTTTGTGAGGAAGAAGTCAGGTGATTTAGTGGTAGCTGGGAAGTTGTTGACGGAAATGATTGGTAGAGGCTTCCTGCCACGAAAATTTACTTTTAATAGAGTATTAAATGGGCTTGTGTTAACAGGCAGTCAAGATTTTGCAAAAGAGATACTAAGATCACAGAGTAGATGTGGCCGGGTTCCTCGGCATTTGAAGCTCTGA | 1485 | 0.4343 | MLKLRSPFYLLHTLKQRFLPPYHSLGTIIQPSPSTPQLVAEDFALAKLILESDTQSLSETLQRTTFQWNPDLVDKVLKRLWNHGPKALLFFKCLEHHPTYTHASSSFDYAIDIAARMRDYKSVWTLVARMRARRVGPSPRTFAIITERYVAAGKADRAVKIFLSMHKHGCRQDLSSFNTILDVLCKSRRAEMAYNLFKVFRGRFRADSISYNIIANGWCLIKRTPKALEVMKEMVERGLTPTLTTYNILLKGYFRTGQLTEAWDFFLEMKKRKCDIDVVTYTTMVHGFGVVGEIQKARKVFDEMIREGVLPSVATYNALIQVLCKKDSVENAILVFEEMVRKGYVPNSVTYNVIIRGLCHTGDMQRAMEFMVRMEEDDCQPNVQTYNVMIRYFCDAGEIEKGLDMLEKMRNRSCLPNLDTYNILISDLFVRKKSGDLVVAGKLLTEMIGRGFLPRKFTFNRVLNGLVLTGSQDFAKEILRSQSRCGRVPRHLKL | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci9g1703 | 494 | Pfam | Pentatricopeptide repeat domain | 146 | 184 | IPR002885 | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 277 | 311 | IPR002885 | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 347 | 381 | IPR002885 | - | |
| Prci9g1703 | 494 | PANTHER | MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE | 39 | 376 | - | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 138 | 172 | IPR002885 | - | |
| Prci9g1703 | 494 | Gene3D | Tetratricopeptide repeat domain | 365 | 493 | IPR011990 | GO:0005515 | |
| Prci9g1703 | 494 | SUPERFAMILY | HCP-like | 205 | 339 | - | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 242 | 276 | IPR002885 | - | |
| Prci9g1703 | 494 | Gene3D | Tetratricopeptide repeat domain | 148 | 257 | IPR011990 | GO:0005515 | |
| Prci9g1703 | 494 | Gene3D | Tetratricopeptide repeat domain | 258 | 364 | IPR011990 | GO:0005515 | |
| Prci9g1703 | 494 | NCBIfam | pentatricopeptide repeat | 209 | 242 | IPR002885 | - | |
| Prci9g1703 | 494 | NCBIfam | pentatricopeptide repeat | 385 | 417 | IPR002885 | - | |
| Prci9g1703 | 494 | NCBIfam | pentatricopeptide repeat | 315 | 347 | IPR002885 | - | |
| Prci9g1703 | 494 | NCBIfam | pentatricopeptide repeat | 245 | 277 | IPR002885 | - | |
| Prci9g1703 | 494 | NCBIfam | pentatricopeptide repeat | 279 | 312 | IPR002885 | - | |
| Prci9g1703 | 494 | NCBIfam | pentatricopeptide repeat | 349 | 383 | IPR002885 | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 382 | 416 | IPR002885 | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 207 | 241 | IPR002885 | - | |
| Prci9g1703 | 494 | Pfam | PPR repeat | 209 | 239 | IPR002885 | - | |
| Prci9g1703 | 494 | Pfam | PPR repeat family | 242 | 288 | IPR002885 | - | |
| Prci9g1703 | 494 | Pfam | PPR repeat family | 381 | 428 | IPR002885 | - | |
| Prci9g1703 | 494 | Pfam | PPR repeat family | 311 | 360 | IPR002885 | - | |
| Prci9g1703 | 494 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 312 | 346 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci9g1703 | Prci-Chr9 | 29162731 | 29164852 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci9g1703 | 141 | 489 | Glycosyltransferase | AT1G05670 | 30.286 | 1.58e-50 | 182 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci9g1703 | - | - | cill:122282717 | 733.791 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Prci9g1703 | 9 | 29162731 | 29164852 | Prci9g1703 | 9 | 29162731 | 29164852 | ECH |