LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g1686	ATGTTGAGGCTGGTTTCAAAGAGAATCTTGGGAGTGTCACGGGAGGTGCCATCACCAACACTCCAAGTTCTGCCTCAATTCTCCCTTGAGAAGGTTGTTGATCGCTACGATGACCTGCAGAATGTCGGACACTTCAATGAGATTGACCCCATCGTCAGTATGGGCTTGGCTAGGGCACCCACTCGTAGGGATGACATGAAACTCCATATTAAGGGCGATGAAAAGACTAGAAAGATTGTTGATGTTCACTTCTGGACCTTTGGCTGTGATTTGGGTGTTGCCTCTTCTTCAGTGGGGGAGCAAATGGAGGGAGTTCCATCCATCAAAAACATAGAAATTGCAAGGCATCTATCATTTCGTCCGTTTAAGGTTCACTGCAGCATGTTTGCTGAGGATGCCATCAAAGCGGGTGTTAAAAGCTACGAAGCTAAGCGAGCCTTGGCAACAGCCGCTGAGGCGACGTCTGGAGAGACAGCTGCCACCCCGGTCATGGCACCTATGAAAAATACACTTCGTCCGATATCTCCTCATCTTTCTATTTATAAGCCTCAGTCCTCCTCCATGGCTTCAATTTTTAATAGAATCTCTGGTGCTTCCCTCGCAGCTATGGTTTTGGGTTTTTATCTTCTATGTCTGAAAATGCCTTTGGTTTGCTTCACTTACGCTGAATTCTACCAATTTTTTCATTTTTCGTCAAAGTTCAGCCTAATCTGTGCCGATATTGCTGCTGTTGCCCTGTGCTATCATCTGGTTGATGGGATTAAGAGATTACTGCATTAG	780	0.459	MLRLVSKRILGVSREVPSPTLQVLPQFSLEKVVDRYDDLQNVGHFNEIDPIVSMGLARAPTRRDDMKLHIKGDEKTRKIVDVHFWTFGCDLGVASSSVGEQMEGVPSIKNIEIARHLSFRPFKVHCSMFAEDAIKAGVKSYEAKRALATAAEATSGETAATPVMAPMKNTLRPISPHLSIYKPQSSSMASIFNRISGASLAAMVLGFYLLCLKMPLVCFTYAEFYQFFHFSSKFSLICADIAAVALCYHLVDGIKRLLH	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g1686	259	CDD	SQR_TypeC_SdhC	172	258	IPR014314	GO:0000104\|GO:0006099\|GO:0009055\|GO:0045281
	Prci9g1686	259	PANTHER	IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG	16	153	IPR002871	GO:0005506\|GO:0016226\|GO:0051536
	Prci9g1686	259	Gene3D	-	29	152	-	-
	Prci9g1686	259	SUPERFAMILY	Fumarate reductase respiratory complex transmembrane subunits	165	258	IPR034804	GO:0016020
	Prci9g1686	259	Gene3D	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	154	259	IPR034804	GO:0016020
	Prci9g1686	259	Pfam	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	171	258	IPR000701	GO:0016627
	Prci9g1686	259	SUPERFAMILY	SufE/NifU	30	145	-	-
	Prci9g1686	259	CDD	IscU_like	30	136	IPR002871	GO:0005506\|GO:0016226\|GO:0051536
	Prci9g1686	259	Pfam	NifU-like N terminal domain	30	146	IPR002871	GO:0005506\|GO:0016226\|GO:0051536

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g1686	Prci-Chr9	29069155	29072803	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g1686	K22068		-	rvl:131335847	209.92

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci4g2858	4	40540153	40542185	Prci9g1686	9	29069155	29072803	CCT
	Prci9g1686	9	29069155	29072803	Prci9g1686	9	29069155	29072803	ECH