Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1678 ATGGATGACCGAGACAATTTTCTTAGCCTGGCTTTGGATGGATATAAACATTGTTTAGTCACTGGGGACAAGTATGATGTGAGAGTGGTGTTTCGTCTAGTTTCCTTGTGGTTCAGTCTCTCTTCTCGAAAAAATGTAGTGAATAGTATGCTTAGCACAATTGATGAGGTTCAGTCTTTTAAATTTATACCTTTAGTGTACCAAATTGCATCTAGAATGGGAAGCTCAAAGGACGGTCAGGGAACTTACGATTTCCAGTGTGCTTTGGTGTCTCTCGTGAAGAAAATGGCCATTGATCATCCATACCATACAATACTGCATCTGTTGGGTCTGGCAAACGGTGACCGTATCAAGGACAATCAGCGTAGTAGGAGTTCATTTGTGGTTGATATGGACAAAAAGCTTGCGGCAGAAAAACTTCTAAATGAGCTATCGTCTTATCATGGAACTATTATCCAACAAACAAGGCAAATGGTGGAGATTTATATCAAGCTTGCTGAGATGGAAACAAGGAGAGAGACCATTATGCAGGATACCAATAAAAGGGTGAGTCTACCGAGAGAATTACGTAGTGTTCCAGCACTGGAACTTGTACCTGTAGTCACAGCTACTGTTCCAATCGACTATAGTTGTCAGTATCATGATGGAACTTTTCCTTATTTCAAAGGACTAGCAGAGTCAGTCATGATAATGAATGGTATAAATGCTCCAAAAGTGGTTGAGTGCCTTGGATCTGATGGTTGCAGGTATCGACAACTTGCAAAATCTGGAAACGACGACCTAAGACAGGATGCTGTGATGGAACAATTCTTTGGTTTAGTTAACACATTCCTGAGGAACCACCAAGATACGTGGAAAAGAAGGTTAAGTATACGGACCTACAAGGTTGTTCCTTTTACGCCAAGTGCTGGTGTTCTTGAGTGGGTTAATGGCACTCTTCCTCTTGGTGAATATCTTATAGGGAGCATGAGAAATGGCGGTGCTCATGGTCGATATGGAATAGGGGATTGGTCATTTCTCGAGTGTAGAGAGCACATGGCCAAGGAAAGAGACAAGCGCAAAGCGTTCCAAGAAGTCTGTAAGAATTTCAGGCCAGTTATGCATTACTTTTTCTTGGAGAGATTTTTCAAGGCAGCTGAGTGGTTTGAGAAGAGACTAGCTTACACACGAAGCGTAGCTGCTAGTTCTATGGTTGGTTACGTAGTTGGCCTTGGTGATCGACATTCAATGAATATTTTAATTGATGAAGCCTCTGCTGAGGTTGTTCACATAGATCTTGGTGTTGCCTTTGAACAAGGTTTGATGCTTAAGACTCCAGAACGGGTTCCATTTAGGCTGACACGAGACATAATTGATGGAATGGGCATAACTGGAGTAGAGGGGGTTTTCCGAAGATGTTGTGAGGAAACTCTTTCTGTTATGAGAACAAACAAAGAAGCATTGTTGACAATTGTTGAAGTTTTTATACATGATCCTCTTTATAAATGGGCTTTATCTCCTCTAAAAGCTTTGCAGCGTCAAAAGGAAACAGATGATGATCTAGATACAACTTTCTTGGAACCTCAAGATGATCATGAAGGAAACAAGGATGCTACCCGTGCGCTATTACGTGTCAAGCAGAAGTTAGATGGATATGAAGAAGGTGAAATGCGGAGTGTACATGGGCAGATTCAGCAACTCATTCAAGATGCAATTGATCCTGAGCGATTGTGCCAAATGTTTCCTGGCTGGGGAGCTTGGTTATAG 1746 0.4181 MDDRDNFLSLALDGYKHCLVTGDKYDVRVVFRLVSLWFSLSSRKNVVNSMLSTIDEVQSFKFIPLVYQIASRMGSSKDGQGTYDFQCALVSLVKKMAIDHPYHTILHLLGLANGDRIKDNQRSRSSFVVDMDKKLAAEKLLNELSSYHGTIIQQTRQMVEIYIKLAEMETRRETIMQDTNKRVSLPRELRSVPALELVPVVTATVPIDYSCQYHDGTFPYFKGLAESVMIMNGINAPKVVECLGSDGCRYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHQDTWKRRLSIRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSMRNGGAHGRYGIGDWSFLECREHMAKERDKRKAFQEVCKNFRPVMHYFFLERFFKAAEWFEKRLAYTRSVAASSMVGYVVGLGDRHSMNILIDEASAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLDTTFLEPQDDHEGNKDATRALLRVKQKLDGYEEGEMRSVHGQIQQLIQDAIDPERLCQMFPGWGAWL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1678 581 ProSiteProfiles FATC domain profile. 549 581 IPR003152 GO:0005515
Prci9g1678 581 CDD PIKKc_ATM 221 498 IPR044107 GO:0004674|GO:0006281|GO:0006974
Prci9g1678 581 Gene3D - 354 562 IPR036940 -
Prci9g1678 581 SMART FATC_2 549 581 IPR003152 GO:0005515
Prci9g1678 581 Pfam FATC domain 552 581 IPR003152 GO:0005515
Prci9g1678 581 SUPERFAMILY Protein kinase-like (PK-like) 158 508 IPR011009 -
Prci9g1678 581 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 391 411 IPR018936 GO:0016301
Prci9g1678 581 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 224 534 IPR000403 -
Prci9g1678 581 ProSiteProfiles FAT domain profile. 1 114 IPR014009 -
Prci9g1678 581 Pfam Phosphatidylinositol 3- and 4-kinase 257 497 IPR000403 -
Prci9g1678 581 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 2 581 IPR038980 GO:0004674|GO:0006974
Prci9g1678 581 FunFam Serine/threonine-protein kinase ATM 146 309 - -
Prci9g1678 581 FunFam Serine/threonine-protein kinase ATM 355 545 - -
Prci9g1678 581 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 254 269 IPR018936 GO:0016301
Prci9g1678 581 SMART pi3k_hr1_6 251 545 IPR000403 -
Prci9g1678 581 Gene3D - 146 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1678 Prci-Chr9 28975908 28988902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1678 370 507 Lipid Metabolism Gene Families AT5G09350 25.676 6.47e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1678 K04728 - pcin:129320695 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g1678 9 28975908 28988902 Prci9g1678 9 28975908 28988902 ECH