Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1354 ATGCAATGCATAGCCTGCCTTCCTCTCTCACCCACTACAAACCCGCAAGTGTCTCATCTGAAACCCCAAAACACCTTGAACTTTCCTAAAGTCACAACAAAACTTATAAACCCCAAAGACAATGATGGCAGTAATCATCAAGACTTGTACAAGTCTTACTTCGATAATATGTCTTCACTATGCAAAGATGGGAAAATCCAGAGATCTCTGGACTTGTTCGCTGAAATGGAATCCAGGAATCTCCATGCTGGACCGGATGTTTATGGAGAAATTCTTCAGGGATGCGTATACGAGCGAGCTCTTTTTCTGGGTCAGCAAATTCATGCTCAGATTATTAAAAAAGGCGACTTATTTTCTCGAAACGAGTACATTGAAACCAAACTGGTGATTTTCTATGCAAAATGTGACGTCTTGGAGGTGGCGAATCATCTATTTCGTAGACTAGAGAAACAGAACGTTTTTTCCTGGGCTGCCATTATTGGTTTGCAGTCTCGGAGCTGTTTGTATGAAGAAGCGTTGTTGAGTTACTGTGAAATGCAAGAGAACGGGGTTCTACCGGATAATTTTGTCATCCCAAATGCGTTGAAGGCTTGTGGTGCTCTGCAATGGAATGGCATTGGGAAGGGAATTCATGGGAACGTCGTCAAGATGATGGGTTTTGGTCACTGTGTTTTTGTCTCAAGTAGTCTCGTGGATATGTATGGGAAATTTGGGTTTTTGGAGGATGCAAGAAAGGTGTTTGATGCTATGCCTGAGAAGAACGTTGTTGCTTGGAATTCAATGATTGTGGGTTATGCCCAAAATGGACTGAACGAGGAGGCAATTAAACTCTTTCATACCATGCGAATGGAAGATGTCGAGCCAACTCAGGTCACTTTGTCAGGTTTACTTACTGCATCTTCTAATTTGGAGGCACTAGAAGAGGGAAGACAAGGGCATGCTCTGGCAATTATAGGTGGATTAGCGTTAGACAACATTTTGGGTAGTTCCCTTGTAAACTTCTATTCCAAGGTCGGACTGATTGAGGAAGCTGAACTGGTTTTCAGCAAAATAATCATGAAAGATGAGGTAACATGGAATTTGCTCACATCCTGTTATGTGCAAAATGGGCTGGTTGAGAAGGCACTTGACATGTGCCATCTGATGAGAGAAGAAAACTTGAGGTTTGACTGTGTGATCCTCTCATCTTTATTGACTGTGGCTGCAGATATAAGGAATGTAGAACTTGGTATGATGGGGCACAGCTATTGCATTAAAAGCAACTTTGAATCTGACTTGGTTGTCTCAAGTAGCATCATAGATATGTATGCAAAATGTGGGAAGATGGATTATGCGAGAAGAGTGTTTAGCTCTACCACAAAAAGAGATATTGTATTGTGGAATACAATGTTAGCTGCTTATGCAGAGCTGGGACTGAGTGGCGAGGTCTTGAGATTGTTCTATAGGATGCAAATGGAGACCATCACACCAAATGTGATATCATGGAATTCTGTGATCTTGGGTTTCTTCAGGAATGGTCAGGTTACTGAAGCTCAAAATATGTTTTCAGAAATGTACTTTCTGGGTGTTCAGCCTAACTTGATCACATGGACTACAATGATGTCTGGTCTGGCTCAGAATGGTCGTAATTATGAAGCTATTCTGGTTTTTAAAGAGTTGCAAAATGTAGGAATTAGAGCCAACAGCATAAGCATGACTTGTGCACTCTCCGCATGTACAAATATGACATTGTTGAAATACGGAAGAGCAATTCATGGTTATGTTCTGAGACATTATGTTTCTCTGTCTCTTCACATCAGGACATCTATAATGGACATGTATGCTAAATGCGGAGCTATAAATGCTGCAAAGAGAGTTTTTAACACGTGTTCAAGAAAGGAATTACCTGTCTACAATGCGATGATCTCTGCTTATGCATTACATGGTCAAGCTATAGAAGCCCTTGCGCTTTTTAGACAAATGGAGAAAGAAGCTATAGTACCAGATCACATGACTTTTACCAGTGTCTTGTCGGCATGCAGCCATGCAGGATTGGTGAAGGAAGGTCTAGAACTTTTCGGTTATATGGTCTCTGAACTCCATATGAAGCCAAGTTCAGAACATTATGGTTGCTTAATTAAACTTCTTTCCCTTCATGGTCACTTAGATGAAGCTCTTAGGATTATTATTACTATGCCTAGCCACCCAGATGCACATATATTAGGATCCATGCTTGTGGCTTGTGGACGAAACCATGAGATTGAACTTGCAGGTTATATAGCAAAATGGTTGTTAAAACTGGACCCAGGTAATTCGGGTATTATGTGGCTCTTTCAAATGTGTATGCAACTGCTGGAAAATGGGATAAAGTATCAAGTATAA 2361 0.4096 MQCIACLPLSPTTNPQVSHLKPQNTLNFPKVTTKLINPKDNDGSNHQDLYKSYFDNMSSLCKDGKIQRSLDLFAEMESRNLHAGPDVYGEILQGCVYERALFLGQQIHAQIIKKGDLFSRNEYIETKLVIFYAKCDVLEVANHLFRRLEKQNVFSWAAIIGLQSRSCLYEEALLSYCEMQENGVLPDNFVIPNALKACGALQWNGIGKGIHGNVVKMMGFGHCVFVSSSLVDMYGKFGFLEDARKVFDAMPEKNVVAWNSMIVGYAQNGLNEEAIKLFHTMRMEDVEPTQVTLSGLLTASSNLEALEEGRQGHALAIIGGLALDNILGSSLVNFYSKVGLIEEAELVFSKIIMKDEVTWNLLTSCYVQNGLVEKALDMCHLMREENLRFDCVILSSLLTVAADIRNVELGMMGHSYCIKSNFESDLVVSSSIIDMYAKCGKMDYARRVFSSTTKRDIVLWNTMLAAYAELGLSGEVLRLFYRMQMETITPNVISWNSVILGFFRNGQVTEAQNMFSEMYFLGVQPNLITWTTMMSGLAQNGRNYEAILVFKELQNVGIRANSISMTCALSACTNMTLLKYGRAIHGYVLRHYVSLSLHIRTSIMDMYAKCGAINAAKRVFNTCSRKELPVYNAMISAYALHGQAIEALALFRQMEKEAIVPDHMTFTSVLSACSHAGLVKEGLELFGYMVSELHMKPSSEHYGCLIKLLSLHGHLDEALRIIITMPSHPDAHILGSMLVACGRNHEIELAGYIAKWLLKLDPGNSGIMWLFQMCMQLLENGIKYQV 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1354 786 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 310 409 - -
Prci9g1354 786 Gene3D Tetratricopeptide repeat domain 404 488 IPR011990 GO:0005515
Prci9g1354 786 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 118 492 IPR046960 GO:0003723|GO:0009451
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Prci9g1354 786 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 54 206 - -
Prci9g1354 786 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 598 773 - -
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Prci9g1354 786 Pfam PPR repeat 357 386 IPR002885 -
Prci9g1354 786 Pfam PPR repeat 57 80 IPR002885 -
Prci9g1354 786 Pfam PPR repeat 458 485 IPR002885 -
Prci9g1354 786 Pfam PPR repeat 430 451 IPR002885 -
Prci9g1354 786 Pfam PPR repeat 329 353 IPR002885 -
Prci9g1354 786 Pfam PPR repeat 701 726 IPR002885 -
Prci9g1354 786 Gene3D Tetratricopeptide repeat domain 213 314 IPR011990 GO:0005515
Prci9g1354 786 Gene3D Tetratricopeptide repeat domain 489 584 IPR011990 GO:0005515
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Prci9g1354 786 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 207 308 - -
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 692 IPR002885 -
Prci9g1354 786 Pfam PPR repeat family 253 299 IPR002885 -
Prci9g1354 786 Pfam PPR repeat family 490 538 IPR002885 -
Prci9g1354 786 Pfam PPR repeat family 630 674 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 665 697 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 458 492 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 528 561 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 493 526 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 256 289 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 630 662 IPR002885 -
Prci9g1354 786 NCBIfam pentatricopeptide repeat 357 390 IPR002885 -
Prci9g1354 786 Gene3D Tetratricopeptide repeat domain 598 778 IPR011990 GO:0005515
Prci9g1354 786 Gene3D Tetratricopeptide repeat domain 54 212 IPR011990 GO:0005515
Prci9g1354 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1354 Prci-Chr9 27063358 27065928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1354 179 762 Glycoside Hydrolase AT3G49170 28.413 9.69e-74 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1354 - - pcin:129321097 1578.92