Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0714 ATGTCTTTGATTGTCTTGGATAGGGGATGCGGTGATGAAAGGATGCTCCAGCTTCAGTCTTGTACATGTCGTGGTGCTTTCACAGCAAAATCATTTCGCCCCTCACCCGCTCTCTTCTCCACTAGGGATCGGAATCATAAGTTTCCTCTCAGTGTTTCGAGAACAATTAGAGGCTGTTGCGGCTTTGACGGAGACTTAGACTCCGATGGAGAGCAAGAAACGGTCTTCTCTAAGAGGACAAATTACGCGGGCGTCCAGTTGGAGGAGACTGTTGATGCCATTTCAGGAAAAATCAGGCTCGATTCTTGGATCTCTTCCCGCATCAGCGGCATAACCAGGGCTCGTGTGCAGTCAAGTATTAGAGCGGGGCTTGTTCTTGTCAACGGCCGTGTTGTTGATAAGGCTTCTTTCAATGTCAAGGTTGGGGATAAGATCAATTGCACGATTTCAGAGTTACAACAGTTGAGAGCTCAGCCAGAACATATGCAGCTAGATATTGTTTATGAAGATGAGCATGTACTAGTAATTAATAAACCTGCGCACGTGGTTGTGCATCCAGCACCTGGAAATACATCTGGTACTCTTGTTAATGGCATTCTTCACCATTGCAGTCTTCCGAATGCTGAGATTTCTGACAAGGAAGTTCTTTCAGAGACTGAAGATTTTGATGATGATTTTGATAGCTTCTCTATTCGTCCAAACTCCAGTGAAGAGTTACAAACATATTCTTACATGTGTGGAGCATCAGTCCGCCCAGGGATTGTGCATAGGCTGGACAAAGGCACTAGTGGATTGCTTGTTGTAGCAAAGGATGAACATTCCCACATCCATTTATCAGAACAATTCAAGTTACGTACTATCAAGAGGGTGTATGTCAGTCTTACTGTTGGGGTTCCCTATCCAACCGCTGGACGTGTTGAGGTTCCAGTTGGTCGTGACCCTAATAACCGGATTCGGATGACTGCTGTAGCTGGATCAGTTAATGCTAGAAAAGCCCGTTATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTAACGGTGCTTGTGCATTGCTTGAATGGAAGCTAGAAACCGGGCGTACTCATCAGATACGTGCACACTCCAAGTATCTAGGAGTTCCTCTGCTGGGTGATGAGGTGTATGGAGGGACGAAGAGCATGGCCTTATCACTCCTACTGCCCAGAATACCGACAAGCTTGCGTGGCAAAATTGTACAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACCCTCGGGTTTCGGCATCCTCATACGGGAGAGCAGTTACACTTTTCATGCCAGCCTCCCGCAGACTTCGATGAAATTTTGAGCCAGCTTCGGAATATTGGACGACCTTGA 1371 0.4632 MSLIVLDRGCGDERMLQLQSCTCRGAFTAKSFRPSPALFSTRDRNHKFPLSVSRTIRGCCGFDGDLDSDGEQETVFSKRTNYAGVQLEETVDAISGKIRLDSWISSRISGITRARVQSSIRAGLVLVNGRVVDKASFNVKVGDKINCTISELQQLRAQPEHMQLDIVYEDEHVLVINKPAHVVVHPAPGNTSGTLVNGILHHCSLPNAEISDKEVLSETEDFDDDFDSFSIRPNSSEELQTYSYMCGASVRPGIVHRLDKGTSGLLVVAKDEHSHIHLSEQFKLRTIKRVYVSLTVGVPYPTAGRVEVPVGRDPNNRIRMTAVAGSVNARKARYAASRYKVIEILANGACALLEWKLETGRTHQIRAHSKYLGVPLLGDEVYGGTKSMALSLLLPRIPTSLRGKIVQMVSRLDRPCLHALTLGFRHPHTGEQLHFSCQPPADFDEILSQLRNIGRP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0714 456 Pfam RNA pseudouridylate synthase 172 369 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci8g0714 456 CDD PseudoU_synth_RluA_like 173 424 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci8g0714 456 Gene3D Pseudouridine synthase 155 439 - -
Prci8g0714 456 ProSiteProfiles S4 RNA-binding domain profile. 98 171 - -
Prci8g0714 456 Pfam S4 domain 99 145 IPR002942 GO:0003723
Prci8g0714 456 CDD S4 98 177 - -
Prci8g0714 456 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 102 447 - -
Prci8g0714 456 ProSitePatterns Rlu family of pseudouridine synthase signature. 255 269 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci8g0714 456 SMART s4_6 98 156 IPR002942 GO:0003723
Prci8g0714 456 Gene3D - 83 154 IPR036986 GO:0003723
Prci8g0714 456 SUPERFAMILY Alpha-L RNA-binding motif 97 185 - -
Prci8g0714 456 SUPERFAMILY Pseudouridine synthase 158 451 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0714 Prci-Chr8 4562910 4568343 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0714 K06180 - gmx:100810383 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0714 8 4562910 4568343 Prci8g0714 8 4562910 4568343 ECH