Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0706 ATGGCCTTCATCAACTCCAGATTGCGCTTCTGCCGCGCTCTCACTCGCACTTCCAAGTTCTATTCTTCTTCTTCATCTTTAGTTTCAGAAGCTACTCTTCAACAAGACGTGAATGAAACAACCCAAAGCACTTCCTTATCTCCTGAAGAAACCGTCGTTGCTGAAAAATTTCACTCTTTAATCAAAGACCATTACCGCAACAACCCTAACCTTAACGCCGTTCCACCCACCCCTCATTTTACAATCCCCGATCTCTCCCTCGACTTTTCTCGACTCTCCGCCCACCATCCACTTTCCCCCTCCATCGCCCGCCGCGTGCTCGAGAAATGCGGCGGTGTCCGCCACGGTATCCCTTTCCTCCAATCCCTCGCTTTCTTCAATTGGGTCACCGCGTGCGAGAGTTTTCCTACTTCGCCGGAGCCCTATGTCGAGATGATTGACCTCGCCGGTAAGCTCAGGCTCTTCGATTTAGCCTGGCATCTCATCGATTTGATGAAAGCCCGAGGCATCCAAATAACCGTTGAGACATTCTCTTTTCTCGTCCGGCGATACGTGAGAGCAGGATTGGCTGCGGAGGCCGTCCACACTTTTAACCGTATGGAAGATTACGGTTGCGCGCCCGACAAGATTGCGTTTTCAATTGTGATTAGTATTCTGTGCAAGAAGAGAAGGGCAAGCGAAGCTCAGTCCTTTTTCGATAGCCTGAAGCACAGATTTGAGCCCGATGTCATAGTGTACACCAACCTGGTTCGTGGTTGGTGCCGAGCGGGTAATATTTCCGAGGCCGAGCGTGTGTTTGGGGAGATGAAGATGGCTGGAATCAAACCCAATGTTTATACTTACAGCATTGTGATCGACTCACTATGTCGGTGTGGGCAAATCACTCGGGCGCATGATGTTTTCTCTGAGATGATAGATGTGGGCTGTGATCCTAATTCCATTACTTTCAACAACCTGATGCGTGTTCACGTCAAAGCTGGAAGAACTGAGAAGGTATTGCAAGTTTATAATCAGATGAAGAGACTCGGGTGTCCCGCTGATACGATCACCTATAATTTCCTAATAGAGACCCATTGTAAAGATGATAATCTTGAGGAAGCTATTAAGGTTTTCAATTCAATGGTTAAGAAAGAGTGTGCTCCTAATGCATCTACTTTCAATCTCTTATTCAGATGCATAGCTAAGTTACATGATATAAACGGTGCTCATAGGTTGTATGCTAAAATGAATGCACTCAAGTGTCAGCCTAATACCCTGACTTACAATATATTGATGGGCATGCTCGCTCATGCGAGATCAACTGATATGGTCCTCAAAATGAAGAAGGAAATGGACGAGAATGAGGTTGAGCCTAATGTGAATACTTACAGGATTTTGATCACAATGTATTGCGGAATGGGACACTGGAACAAAGCGTACAAGTTGCTGAGAGAGATGGTTGAAGAGAAATGCATTAAACCGAATCAGGGGGTTTATGAGATGGTTCTGAGCGAGCTAAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGTTCCATATAG 1578 0.4613 MAFINSRLRFCRALTRTSKFYSSSSSLVSEATLQQDVNETTQSTSLSPEETVVAEKFHSLIKDHYRNNPNLNAVPPTPHFTIPDLSLDFSRLSAHHPLSPSIARRVLEKCGGVRHGIPFLQSLAFFNWVTACESFPTSPEPYVEMIDLAGKLRLFDLAWHLIDLMKARGIQITVETFSFLVRRYVRAGLAAEAVHTFNRMEDYGCAPDKIAFSIVISILCKKRRASEAQSFFDSLKHRFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPADTITYNFLIETHCKDDNLEEAIKVFNSMVKKECAPNASTFNLLFRCIAKLHDINGAHRLYAKMNALKCQPNTLTYNILMGMLAHARSTDMVLKMKKEMDENEVEPNVNTYRILITMYCGMGHWNKAYKLLREMVEEKCIKPNQGVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Prci8g0706 525 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 236 520 - -
Prci8g0706 525 Gene3D Tetratricopeptide repeat domain 103 227 IPR011990 GO:0005515
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Prci8g0706 525 Pfam PPR repeat family 416 464 IPR002885 -
Prci8g0706 525 Pfam PPR repeat family 241 290 IPR002885 -
Prci8g0706 525 Pfam PPR repeat family 347 394 IPR002885 -
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Prci8g0706 525 Pfam PPR repeat 314 344 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 279 312 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 314 347 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 244 278 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 176 208 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 420 453 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 385 418 IPR002885 -
Prci8g0706 525 NCBIfam pentatricopeptide repeat 349 383 IPR002885 -
Prci8g0706 525 SUPERFAMILY TPR-like 207 431 IPR011990 GO:0005515
Prci8g0706 525 Gene3D Tetratricopeptide repeat domain 443 518 IPR011990 GO:0005515
Prci8g0706 525 Pfam Pentatricopeptide repeat domain 161 219 IPR002885 -
Prci8g0706 525 Gene3D Tetratricopeptide repeat domain 234 329 IPR011990 GO:0005515
Prci8g0706 525 Gene3D Tetratricopeptide repeat domain 330 442 IPR011990 GO:0005515
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Prci8g0706 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0706 Prci-Chr8 4555585 4557418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0706 176 525 Glycosyltransferase AT1G05670 23.864 1.81e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0706 - - qsa:O6P43_016313 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0706 8 4555585 4557418 Prci8g0706 8 4555585 4557418 ECH