Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0417 ATGTCTGCAGTCGAAGCGGAGAAGCATGTCGAAGAAGAGAAGGAGGTGGTGAGAAGAGGAGAGCTCTTGTTCTGCGGGGGTACTTGTTGGGATATTATTGGTCGTCGTAAAGGTCCAGCTGACGGCAACTTGGTCTCTCCAACTCGACTTCGGCCCCTCGTTGGGGTCGATATTCGATTCGTTGCATCTGGGTGCGCGTCTTGTCATTGTGTGGCATTAGATGTTGAAGGGCGCTGCTATACATGGGGACGCAATGAGAAGGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACTGTGGTATCTGAACTTTCGAAATATAAAATAGTCAAAGCCGGAGCAGGGAGGAACCACACAGTGGTGGTTACAGAGGATGGACATTCCCTTGCCTTTGGTTGGAATAAGCATGGACAGCTAGGTTCAGGCTCTGTGAAAAATGAAATTGAATTATCTCCTGTTCGCTGTCTTGTGTCAGAAGTCAATTTTGCTACTTGTGGCGGTGACTTCACTGTGTGGCTATCTTCTGTTGAAGGAGCTTCTATACTTACTGCAGGGCTACCACAGTATGGGCAGCTAGGACATGGAACGGACAATGAGTATAATTCCAAAGACAGTTCTGTGAGGTTGGTTTATGAAGCCCAACCACGTCCACGGGCAATTGCTAAGCTATCTGGTGAAACAGTTGTCAAAGTGGCATGTGGGACAAATCACACAGTGGCGGTGGATAAGAATGGCTTCGTTTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGGCATAGGGAGCAGAAGGATGAGTGGGTCCCACGTCGTGTGGATGCTTTTCGAGATAGAAATGTTCTGCCTCCTGATGCAGTGATTTCGGCTGGTTCTGTTAACTCTGCATGCACTGCAGGTGGAGGGCAATTATATATGTGGGGCAAAATAAAGAATACAGGAGATGATTGGATGTATCCTAAGCCTCTGATGGACTTAAGTGGCTGGAACTTACGATGCATGGATTCAGGCAATATGCACCACTTTGTTGGGGCTGATTCTTCATGTATAAGTTGGGGCCATGCTCAACATGGAGAACTGGGATATGGACCTAATGCGCAGAAGTCTTCAGCAGTACCCAAAAAGGTGGATATTCTTGAGGGCATGCATGTTATGGGTGTTGCTTGTGGTATGGGTCACTCCATGGTCATTGTCGATGGAACAAATGTTGGTGAACGACTTGACCAGCTTGATATATACGATGGGAAAGCTTCTGGTGAAGTAAATGAGGAACCTGTAAAGAAAACTCCAGTGCCTAAGCAGAGTACAAAAAAGGGTGCAAAAAGTGGTGACAACTCCAAGAAGAAGAAAACAAAAGAATCATCTGAATCAGAGGAGGAAGAGGATGAGGAAGCAAGTGATGGTGAGGAGCAAGTAAATGGCATGGCCAAGGGGAAAAGGAAACGCGGTGGAAATAATTCTGGCAAAGCGAAAGGTAAAGCTAAAGGTTCTGGCCCTGGGCGAAATCGGTCTTCGGTGAAAACGGGTAAGAGAGGAAGACCCCGTAAGTCTTGA 1560 0.4737 MSAVEAEKHVEEEKEVVRRGELLFCGGTCWDIIGRRKGPADGNLVSPTRLRPLVGVDIRFVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVKAGAGRNHTVVVTEDGHSLAFGWNKHGQLGSGSVKNEIELSPVRCLVSEVNFATCGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIAKLSGETVVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVDAFRDRNVLPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPNAQKSSAVPKKVDILEGMHVMGVACGMGHSMVIVDGTNVGERLDQLDIYDGKASGEVNEEPVKKTPVPKQSTKKGAKSGDNSKKKKTKESSESEEEEDEEASDGEEQVNGMAKGKRKRGGNNSGKAKGKAKGSGPGRNRSSVKTGKRGRPRKS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0417 519 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Prci8g0417 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Prci8g0417 519 Gene3D - 211 438 IPR009091 -
Prci8g0417 519 MobiDBLite consensus disorder prediction 418 433 - -
Prci8g0417 519 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Prci8g0417 519 MobiDBLite consensus disorder prediction 418 519 - -
Prci8g0417 519 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Prci8g0417 519 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Prci8g0417 519 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Prci8g0417 519 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Prci8g0417 519 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Prci8g0417 519 PANTHER PROTEIN RCC2 7 500 IPR028641 -
Prci8g0417 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Prci8g0417 519 SUPERFAMILY RCC1/BLIP-II 18 402 IPR009091 -
Prci8g0417 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Prci8g0417 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Prci8g0417 519 Gene3D - 6 210 IPR009091 -
Prci8g0417 519 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Prci8g0417 519 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Prci8g0417 519 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Prci8g0417 519 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Prci8g0417 519 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Prci8g0417 519 MobiDBLite consensus disorder prediction 442 458 - -
Prci8g0417 519 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Prci8g0417 519 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0417 Prci-Chr8 2648921 2655560 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0417 - - gmx:100819842 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0417 8 2648921 2655560 Prci8g0417 8 2648921 2655560 ECH